| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4471 |
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| Symbol | |
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| ID | 7972759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4717977 |
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| End bp | 4722056 |
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| Gene Length | 4080 bp |
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| Protein Length | 1359 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795060 |
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| Product | protein of unknown function DUF490 |
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| Protein accession | YP_002946348 |
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| Protein GI | 239817438 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACCG ACGCCGAACC CCAGTCCACG CCACGCGCAC GGCGCTCGCG CACGCGGCGC
GCGCTGCGTG CGCTCGGCTG GATGTTCGCG GGCCTGCTCG CGCTGGTGCT CGTGATCGGC
GCGGCCGCGT GGTGGTGGAT CGGCTCCAAC CAGTCGCTGG CCTTCGCGCT CGCCAAGGCC
GCGCGCTATT TGCCCGCCGG GCAGACGCTC GAAAGCCGCG AGGTCACGGG CTCGCTGCGC
ACGGGCGGGC GCATCGGCTG GCTGCGCTGG CAAAGCGACA AGCTGGCGGT CGAGGTGCAG
GAGGCAAGCG TCGGCTGGCA GCTCGCGCCG CTGTTCCAGC GCAAGCTGCA GCTCGGCGAA
GTGCATGCGG CGCGCCTGCT CATCGAACGC CGCGGCCCGC CGAGCGACAC GCCCACCGAG
CCGCTCGAAC AGCTCGCGCT GCCGATCGAG GTCGAGCTGC CGTTCCGCAT CGACGAGCTG
CGCTGGACGG GCCCGCCCGC GCTGCAGGCC AGCCAGCTCG CGGGCAGCTA CCGCTACACC
GGCGCGGAGC ATCGGCTGGA GGTCAAGGGC GTCGACATTG CCGACGGCCA CTACAGCGCG
CGCGTCAAGC TGCAAGGGCC CGCGCCGATG GCGCTCGACG CCACGCTCGA CGGCCGCGTG
AAGGCACCGC TGGCCGAAGA CCGCAGCATC GAGGTGCTGG CCCAAGCCGC CATCAAGGGC
ACGCTCGCCG GCACCGGCGC GCGGCTGCAG GTGGCCGCCG AACTGAAGCC GGCCGAGCCC
GATGCCGAGG CCCCCATGGA AGCAAAGCTG CAGGCGAACG TCGCGCCCTG GCTGCCGCAG
CCCGTCATCG ATGCCAAGGC CGACCTGCGC AACGTCGATG CGGCCAGCCT CTGGCCCGGC
GCACCGCGCA CCCGGCTGAC CGGCACGGTC GAGCTGCAGC CCGACGCGGC CACCGGCCCC
GCCGCTTGGC AGGCCTCGGC CAGCATCCGC AATGCACTGC CCGGCCCCTG GGACAAGGGC
GCGCTGCCGC TCGAACAGGT CGAGGCGCGC GTGGGCTTCG ACGGCACCAG CTGGACGATT
CCCGAAGCCA CGCTGCGCGC CGGCGGCGGC CGCATCGACG CCGAAGGCCG CTGGAGCCCC
GCGCCCGCGC CGTGGCAGGC GCGCGCCACC GTGCGCGGCG TGCGGCCCGG CCTGCTGCAC
AGCGAGCTGT CCGGCGCGCC GATCAACGGC ACGGCCACGG CGCAGCAGCG CGAGGACACC
ATCGGCTTCG ACCTTGCGCT GCGGGCCCAG GGCGGTGCCG GCAGCGCGGC CATGCCGGGC
CTCGGCCTCG ACCGCGTGCT CGCCCAGGGC CAGTGGAAGA ACCAGGTGCT GGACCTGCGC
ACGCTGCGCG TCGAAGCCGA ACGCGCCAGC ATCGGCGGCC GGTTGCAGGT GCGCGTGGCC
GAGCAGGCCG CGAGCGGCAA GCTCGACCTC ACGCTGCCGG GCGGCGGCGC GCAGCTCGAA
GGCCGCATCG CACCGGCGCA GGGGGCCGGC GAGATCAAGG CGCGCATCGA CGACGCCGAA
GCCGTGCAGC GCTGGATCGA AGGCCTGCCC CAGATGTCGA AGCTGTTCGC GGGCAAGTCC
GCCAAGGGCT CCGCGCAGCT CGACGCCAGC TGGCAGGGCG GCTGGCAGAC GATCCAGCGC
CGGCTCGAGA ACCCCAATGC GCCGGCCCAG CGCGGCATTG CGGAGCCCAG CCTCAAGGCC
GTGCTCGGCG TGCCGCGCCT GGAGCTGCGC ATGCCGGCTG CCGAGGGCAA TGGCAACGCA
GCGGCCTCCA CCGTCCAGCT CAAGGGCCTG CAAGCGGAGC TTGCCGGCAG CCTGGCGCAG
GCCACGCTCG CGCTGCAGGG CGAAGCCAGC ACCGGCACGC AGAAGCTCAC GCTCGATGCG
CGCGCGAGCG GCGGCCTTGC AGGGCCCAAC CAATGGCGCG CAGCGCTCGC CAGCCTGCGC
CTGCAGGCCC AGGACAGCGC GAAGCCCGCC ACCGCCAGCG CGCCCTGGAC GCTGGAGCTC
GGCCGCGAGC TCACCGCCAC CCTCAAGACC AGCGGAAGCG GCAGCAGCAG CCGGCTCGAT
CTCGAAGCCT CGGCCGCTGC CGCCACCTTG CGCGGCCCCG CACCCGGCAC CGTGCGCATC
GAGTGGCAGC CGCTGCGCTT CACCCGGAGC GGCGCGGCGC CCGACCAGGC CTTCCGCCTG
CAGTCCAAGG GCAAGCTGCA GGGCCTTCCG ATGGCCTGGG CCGAGGCCTT CGGCGCCAGC
GCCACCTTCA ACGAGATCGG CGTGAGCGGC GACCTCGTGT TCGACGGCGA CTGGGACATC
GATGCCGGCG ACACCCTGCG CGCCCATGCG CGGATCGCAC GCCAGAGCGG CGACATCCGC
GTGCAGGCGG GCGAGGCCGC GCTGGTCACG CGCATCACGA GCCGCGGCAC CGGCACGGCC
AGCGAGCGCA CGATGAATTC CGCCACCGCG CAGGGCACCG CGCCCAGCAC GCCGGCCGGC
CTGCGCCAGG CCGAACTGCG GCTCGACGCG CAGGGCGAGG CCGTGCGCGC CACGCTGACT
TGGGACAGCG AACGCGCGGG CAAGATCGGT GCAGAGCTCA ACACGCGCAT GCAGCAGCGC
GCGGGCGGCT GGCAATGGGC GCCCGATGCG CCGCTGGCCG GCAACATCAA GGCCACGCTG
CCCAACCTTG GCGTGTGGTC GATGCTCGCG CCGCCCGGCT GGCGCGTGGC GGGCACGCTG
GACGCCGATG CCGCGCTCTC GGGCAACCGC GCAGCGCCGC GCTGGAACGG CACGCTGGGC
GCCGACAAGC TCGCGCTGCG CGCGCCGGTC GAAGGGCTCG ACCTGCGCGA CGGCCGGCTG
CGCGCCACGC TCACCGGAGA GCGCATCGAG ATCACCGAAT TCACGCTCAA GGGCGGCGCC
GGCAGCACGG TGCGCATCGG CGGCCAGAGC GGCAACCGCA GCACCGCGGC CAGCCAGGCC
GCGAGCGACG GCGGCTCGCT CTCGGCGCGC GGCGACATGG CCTGGGGCGC GGCCGGCGCC
TCGGGCACGG GTATCCGCAT GGCGCTGCAG GCCGACCTGC GCGCGCTGCG CGTGCTGGTG
CGCACCGACC GGCAGCTCAC GCTCTCGGGC AACCTGCAGG CGCGGCTCGA CGGCGGCCAG
TTCAGCGTGC GCGGCAAGCT CAAGACCGAC CGCGCGGTGA TCATCCTGCC CGACGAGACC
GCGCCGAGCC TGGGCACCGA CGTGGTGGTG CGCTCCGCCG CCAAGGACCG CGAGCTGGCC
GAGCAGGCCC AGCGCGACGC CGCGCGCAAC GAGGCACAGG CCGCCAGGCC GCAGACCGCG
AAGCCGCCCG ACATCGTGGT GAACTTCGAC CTGGGCGACG ACTTCGCGGT GCAGGGGCGC
GGCATCACCA CGCGGCTCGA GGGCGACCTG GAGATCCGCA GCACGCGCCT CGACGCACCG
CCGCGCATCA CCGGCGAAGT GAAGACCGTC AAAGGCCAGT ACCGCGCCTA CGGCCAGCAG
CTCGACGTGG AAACCGGCGT GGCCCGCTTC AACGGGCCCT TCGACAATCC CGCGCTCGAC
ATCCTGGCGA TTCGGCCCAA CATCTCGCAG CGCGCCGGCG TGCAGATCAC GGGCACCGCG
CAGTCGCCGC GCGTCAAGCT CTATTCGGAG CCCGCGCTGT CCGATGCGGA GACGCTCTCG
TGGGTGGTGC TCGGCCGCGC CTCGGCCACC AGCGGCGGCG AATCGGCGCT GCTGCAGCAG
GCGGCGCTGG CACTGATCGG CCACGTCAGC AAGGGCACGA GCGGCGGCAG CCTGGCCGGC
CGCTTCGGCC TGGACGAACT CGGCTTCAAG GGCCCCGGCA GCGGCGGCGA CCTGCGCGAA
TCGGCGGTCA CGCTCGGCAA GCGGCTGTCG AAGGACTTCT ATCTCACCTA CGAACGCAGC
CTGGGCGGCA CCTTCGGCAC CATCTTCATC TTCTACGACC TGACGCAGCG CCTCACGCTG
CGCGGACAGG CCGGCCAGAC CAGCGGGCTC GACCTGATCT ACACGCTCAA GTACGACTGA
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| Protein sequence | MQTDAEPQST PRARRSRTRR ALRALGWMFA GLLALVLVIG AAAWWWIGSN QSLAFALAKA
ARYLPAGQTL ESREVTGSLR TGGRIGWLRW QSDKLAVEVQ EASVGWQLAP LFQRKLQLGE
VHAARLLIER RGPPSDTPTE PLEQLALPIE VELPFRIDEL RWTGPPALQA SQLAGSYRYT
GAEHRLEVKG VDIADGHYSA RVKLQGPAPM ALDATLDGRV KAPLAEDRSI EVLAQAAIKG
TLAGTGARLQ VAAELKPAEP DAEAPMEAKL QANVAPWLPQ PVIDAKADLR NVDAASLWPG
APRTRLTGTV ELQPDAATGP AAWQASASIR NALPGPWDKG ALPLEQVEAR VGFDGTSWTI
PEATLRAGGG RIDAEGRWSP APAPWQARAT VRGVRPGLLH SELSGAPING TATAQQREDT
IGFDLALRAQ GGAGSAAMPG LGLDRVLAQG QWKNQVLDLR TLRVEAERAS IGGRLQVRVA
EQAASGKLDL TLPGGGAQLE GRIAPAQGAG EIKARIDDAE AVQRWIEGLP QMSKLFAGKS
AKGSAQLDAS WQGGWQTIQR RLENPNAPAQ RGIAEPSLKA VLGVPRLELR MPAAEGNGNA
AASTVQLKGL QAELAGSLAQ ATLALQGEAS TGTQKLTLDA RASGGLAGPN QWRAALASLR
LQAQDSAKPA TASAPWTLEL GRELTATLKT SGSGSSSRLD LEASAAAATL RGPAPGTVRI
EWQPLRFTRS GAAPDQAFRL QSKGKLQGLP MAWAEAFGAS ATFNEIGVSG DLVFDGDWDI
DAGDTLRAHA RIARQSGDIR VQAGEAALVT RITSRGTGTA SERTMNSATA QGTAPSTPAG
LRQAELRLDA QGEAVRATLT WDSERAGKIG AELNTRMQQR AGGWQWAPDA PLAGNIKATL
PNLGVWSMLA PPGWRVAGTL DADAALSGNR AAPRWNGTLG ADKLALRAPV EGLDLRDGRL
RATLTGERIE ITEFTLKGGA GSTVRIGGQS GNRSTAASQA ASDGGSLSAR GDMAWGAAGA
SGTGIRMALQ ADLRALRVLV RTDRQLTLSG NLQARLDGGQ FSVRGKLKTD RAVIILPDET
APSLGTDVVV RSAAKDRELA EQAQRDAARN EAQAARPQTA KPPDIVVNFD LGDDFAVQGR
GITTRLEGDL EIRSTRLDAP PRITGEVKTV KGQYRAYGQQ LDVETGVARF NGPFDNPALD
ILAIRPNISQ RAGVQITGTA QSPRVKLYSE PALSDAETLS WVVLGRASAT SGGESALLQQ
AALALIGHVS KGTSGGSLAG RFGLDELGFK GPGSGGDLRE SAVTLGKRLS KDFYLTYERS
LGGTFGTIFI FYDLTQRLTL RGQAGQTSGL DLIYTLKYD
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