Gene Vapar_4470 details

Gene Information

• Locus tag: Vapar_4470
• ID: 7972758
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4716031
• End bp: 4717962
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644795059
• Product: surface antigen (D15)
• Protein accession: YP_002946347
• Protein GI: 239817437
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0729] Outer membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.410788
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCAGGG TGGTTCCAGT CATTGCGCCG GCGTGGTTGC CGGCCTTGCT TTTTTGCGGC 
GTCCTGCTCT TGCAGGGATG CAGCCTGCTG CCGAAGAAGG ACAGCGCGCA GGACACGGCC 
ACCCCCGCGC TGGTGCGCAG CGACGGCGCG GCCGCCGATG CGGACCGCAA GGACGGCGAG 
CGAAGCGGGC CGCGGCGCGA CGCCTTCACC GTCGAGGTGC GCGGGCCCGA CACGGTGCGC 
GAGTACCTCA CGCTGCACCT GGACATCCAG CGCTACCGCA CGCTCGACGA CCTGGGCGCC 
ACCGAAATCT CGCGGCTCAT GGTGGCGGCC GAAGGCAATG CGCGCGAACT GCTCGGCACG 
CTCGGCTATT TCACGCCCAC GCTGACGCTG GAGCTCAACG AGACGCCGGC CAGCGACAAG 
GCGCCGCGCG AGATCGTCAT CACGGTGGAG CCGGGCGAAC TCACGCGCGT GAGCAACGTG 
CAGATCAGCT ACGGCGGCGC CATTGCAGAC GACCCCACGG CCGAGGCCCA GCGCGATTCG 
ATCCGCACCG GCTGGACGCT GCGCCCGGGC CAGCCCTTCA CGCAGCAGGG CTGGGACAAC 
GCCAAGACCA TTGCATTGCG CAGCCTCACG GCCAGGCGCT TTCCCACCGG CAGCGTCGAA 
GTGAGCCGCG CCGAGGTCGA TGCCGACCGG CACGAGGCCC GCCTCAGCGT CACCTACCAG 
TCGGGCCCGG CCTACCGCTT CGGCCCGCTC GTGCTGCGCG GCACCGAACG CTACGACGCC 
GACGGCGCGC GCCGCATCGC GCAGCTTCCC ACCGGCACCG ACTACGACCA GCAGAAGCTG 
CTCGATGCCC AGCAGCGCCT GGCCAGCAGC GGCTATTACG ACTCGGTGTT CCTCACGCTC 
GACACCGAGA GCGGCACGCC GCTGGCCGCC CCGGTGATTG CGCAGCTGCG CGAAGCGCCG 
ATGCAGAAGG TGGTGCTGGG CGCGGGCTTC ACCACCGACA ACGGCCCGCG GCTGTCGGTG 
GACCACATCC ACAACCGGCT GCCGCTGCTC GGCTGGCGCG CCGTGTCGCG ACTGTCGGTC 
GATCGCGACA TCAAGTCGCT GGGCACCGAG TGGAACGCCA TTCCCGATGA CCGCGGATGG 
CGCTGGTTCG CGGGCGCCGG GCTCAAGAGC GAAACCTCCG GCAGCTACGT GGTCGACAGC 
GGCCGCCTGC GCAGCGGGCG CAGCAAGTCC AGCGGCCACA TCGACCGCAG CTACTTCCTG 
CAGTACGACT ATGCGCAGAA CCGCGGCATC AACGCCCCGC CCTCGGCCTC CGCCGTGACC 
GCCAACTGGG GCTGGACCGG CCGCTATTTC GACGACAACG CCGCGCCCAC GCGCGGCTTC 
GGCCTGGCGC TCGAACTGGG CGCCGGCTAC ACGCTGACCG GCGAGCGCCT GCCCTTCACG 
CGCACCTATG CGCGCTGGCT CGGCGTGCTG CCGCTGGGCT TCGCCGAAGA CCGCGACGCC 
GACACGCTGG CGCGCCGCAG CCGGCTGCAG CTGCGCGCCG AAGCCGGTGC CGTGTCCGCC 
AAGGACAGCG CGCAGATTCC CTCCACGCTG ATGTTCCTCA CGGGCGGCGA CACCACCGTG 
CGCGGCTACA GCTACCGCCA GATCGGTACC GTGCGCAGCG ACGGCCAGAT CGTGGCGGGC 
CGCTACCTGG GCGTGGTGAG CGTCGAATGG CAGCGGCCCT TCGTCTACAA GGACAAGCTC 
ACCGAATGGG AGAGCGTGGT GTTTGCCGAC GCCGGCGCGG TGGCCGACAA GCCCGGCGAG 
CTCAAGCCGA AGGTCGGCGT GGGCGTGGGC GCGCGCTGGC GCAGCCCGGT CGGGCCGGTG 
CAGGCCGACC TCGCCTATGG CGTGGACACG CGCAAGTTCC GCCTGCACTT TCGCCTGGGC 
TTCACTTTCT GA 

 

Protein sequence

MLRVVPVIAP AWLPALLFCG VLLLQGCSLL PKKDSAQDTA TPALVRSDGA AADADRKDGE 
RSGPRRDAFT VEVRGPDTVR EYLTLHLDIQ RYRTLDDLGA TEISRLMVAA EGNARELLGT 
LGYFTPTLTL ELNETPASDK APREIVITVE PGELTRVSNV QISYGGAIAD DPTAEAQRDS 
IRTGWTLRPG QPFTQQGWDN AKTIALRSLT ARRFPTGSVE VSRAEVDADR HEARLSVTYQ 
SGPAYRFGPL VLRGTERYDA DGARRIAQLP TGTDYDQQKL LDAQQRLASS GYYDSVFLTL 
DTESGTPLAA PVIAQLREAP MQKVVLGAGF TTDNGPRLSV DHIHNRLPLL GWRAVSRLSV 
DRDIKSLGTE WNAIPDDRGW RWFAGAGLKS ETSGSYVVDS GRLRSGRSKS SGHIDRSYFL 
QYDYAQNRGI NAPPSASAVT ANWGWTGRYF DDNAAPTRGF GLALELGAGY TLTGERLPFT 
RTYARWLGVL PLGFAEDRDA DTLARRSRLQ LRAEAGAVSA KDSAQIPSTL MFLTGGDTTV 
RGYSYRQIGT VRSDGQIVAG RYLGVVSVEW QRPFVYKDKL TEWESVVFAD AGAVADKPGE 
LKPKVGVGVG ARWRSPVGPV QADLAYGVDT RKFRLHFRLG FTF