Gene Vapar_4466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4466 
Symbol 
ID7972754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4712421 
End bp4713113 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content65% 
IMG OID644795055 
Productcytochrome c class I 
Protein accessionYP_002946343 
Protein GI239817433 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.657614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAGT TGTTGACCAC GATGTTTGCC TTCGCTGTCG CTTGCGTGAC GGTCTCGGCG 
CAAGCCCAGC AAGTCACGGG CAATGCCCAG GAGGGTGCCA AGAAGGTTGC CATGTGCGTG 
GGTTGCCACG GCATCATCGG CTACCAGGCC AGCTTTCCGG AGATCCACAA GGTCCCGATG 
ATCGCCGGCC AGAGCGCCAG CTACATCACC TCGGCCCTTA CCGCCTACAA GGGCGGCGAC 
CGCAAGCACC CCACCATGCG CGCGATTGCC GACACCCTGA AGGAACAGGA CATCGCCGAC 
CTGGCCGCCT ACTACAGCCA GCTGGGCCTG AAGGAAGGCG ACGCGCCCCC GGCCGCGCTG 
GCCAAGCCCA TGCCCGAGAA CGTGCAGGCC CTGGTGTCGC GCGACAAGGA CAACAGCTGC 
ACCAAGTGCC ACGGCGCCAA CTTCAGCACG CCCAATGACG GCACGGTGCC CAAGCTGGCC 
GGCCAGCATG CCGACTACCT CTTCGTGGCG CTCAAGTCGT ACCGCGTGAA GAACAACCTG 
CACCTGGGCC GCTCGAATGC GGTGATGGCA CAGCAGGTCG AGCCCAAGAA GTTCAGCAAC 
GCCGAACTCA AGACGCTCGC GAGCTACATC AGCTCGCTGC CCGGCGACCT CAAGACGGTG 
CCGGAATCGC GCATCCACCG CGCCGCCGAG TAA
 
Protein sequence
MNKLLTTMFA FAVACVTVSA QAQQVTGNAQ EGAKKVAMCV GCHGIIGYQA SFPEIHKVPM 
IAGQSASYIT SALTAYKGGD RKHPTMRAIA DTLKEQDIAD LAAYYSQLGL KEGDAPPAAL 
AKPMPENVQA LVSRDKDNSC TKCHGANFST PNDGTVPKLA GQHADYLFVA LKSYRVKNNL 
HLGRSNAVMA QQVEPKKFSN AELKTLASYI SSLPGDLKTV PESRIHRAAE