Gene Vapar_4465 details

Gene Information

• Locus tag: Vapar_4465
• ID: 7972753
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4711739
• End bp: 4712347
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795054
• Product: protocatechuate 3,4-dioxygenase, alpha subunit
• Protein accession: YP_002946342
• Protein GI: 239817432
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3485] Protocatechuate 3,4-dioxygenase beta subunit
• TIGRFAM ID: [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.850888
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGATGA CCGCACAGGA AGCCGACTTC GGCCAGACAC CCTCCCAGAC CGTGGGCCCC 
TACTTCGCCT ACGGCCTCAC CGCCGCGCAG TACGGCTACG ACTTCGACCA GCCCTTCGAC 
GCCGTGGTGG CCCTGGACAA CGCCAGCGGC GAGCGCATCC GCCTTGAAGG CCGCGTGATC 
GACGGCGACG GCAACCCCAT CGGCGATGCG CTGGTCGAGA TCAGCCAGCC TGACGGCGAG 
GGCCGCTATC CGCAGACGCC CGAAGAGGCG CGCGAGATCG GCTTTCGTGC CTTCGGCCGT 
GCCGGCACGG GCACCGATGC GCAGAACCGC TTCGTGTTCC ACACCGTGAA GCCGGGCGCC 
GAATCGCCGG GCGAAGCCCC GCATATCAAC GTGATCGTGC TGATGCGCGG CCTGCTGCTG 
CATGCCTTCG CGCGCGTGTA CTTCAGCGAC GAGGCCGAAG CCAACGCCAA GGACGCCGTG 
CTGGCCAGCG TGCCGGCCGA GCGCCGCCAC ACGCTGATTG CCGAGCGCGT GGAGCAAGGC 
GGCGCGGTGA GCTACCGCTT CGACATCCGC ATGCAGGGCC CCCAGGAGAC GGTGTTCTTC 
GACGTCTGA 

 

Protein sequence

MLMTAQEADF GQTPSQTVGP YFAYGLTAAQ YGYDFDQPFD AVVALDNASG ERIRLEGRVI 
DGDGNPIGDA LVEISQPDGE GRYPQTPEEA REIGFRAFGR AGTGTDAQNR FVFHTVKPGA 
ESPGEAPHIN VIVLMRGLLL HAFARVYFSD EAEANAKDAV LASVPAERRH TLIAERVEQG 
GAVSYRFDIR MQGPQETVFF DV