| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4464 |
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| Symbol | |
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| ID | 7972752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4711003 |
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| End bp | 4711719 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795053 |
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| Product | protocatechuate 3,4-dioxygenase, beta subunit |
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| Protein accession | YP_002946341 |
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| Protein GI | 239817431 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.525736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGACGA AAACCCCGGC CACCCTCACC CCCCGCGACT GGGAAGCCCA TCCCTCGTAC
ATCTACCCCG GCTACAAGTC GACCGCGAAG CGCGGCCCGC AGAAGCCCCT GGTGCCGCTG
AAGGCCTCGC TCGGCGAGCT GCAGCAGCCG GTGTACGGCC ACGACAGCAT CGGCGAGCTC
GACCACGACC TGACGCGCAA TGCGCGCAGG AACGGCGAGC CGCTCGGCGA ACGCATGATC
CTCACCGGCC AGGTGCTCGA CGAGCGCCGC CGTCCCGTGG CCAACACGCT GGTCGAGCTC
TGGCAGGCCA ACGCCTCCGG CCGCTACGTG CACAAGGTCG ACCAGCACGA CGCGCCGCTC
GACCCCAACT TCCTGGGCGC GGGCCGCTGC CTGACCGACA GCGAGGGCCG CTACCGCTTC
CTCACCATCA AGCCCGGCGC CTATCCCTGG GGCAACCACC CCAACGCCTG GCGCCCGCAG
CACATCCACC TGTCGCTGTT CGGCCAGAGC TTTGCGAGCC GGCTGGTCAC GCAGATGTAC
TTCCCCGGCG ATCCGCTGCT GCAATACGAC CCCATGGTCA CCGGCACGCC CGAGCGCTAC
CGCAACCGGC TGATCGCCGA CTTCAGCCTC GACATCACCG AGGAAGGCTA CGCGCTGGGC
TACCAGTTCG ACATCGTGCT GCGCGGCGCC GACGAAACCC CCTTTGAGAA CCGCTGA
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| Protein sequence | MLTKTPATLT PRDWEAHPSY IYPGYKSTAK RGPQKPLVPL KASLGELQQP VYGHDSIGEL
DHDLTRNARR NGEPLGERMI LTGQVLDERR RPVANTLVEL WQANASGRYV HKVDQHDAPL
DPNFLGAGRC LTDSEGRYRF LTIKPGAYPW GNHPNAWRPQ HIHLSLFGQS FASRLVTQMY
FPGDPLLQYD PMVTGTPERY RNRLIADFSL DITEEGYALG YQFDIVLRGA DETPFENR
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