| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4459 |
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| Symbol | |
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| ID | 7972747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4702271 |
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| End bp | 4705345 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795048 |
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| Product | Mur ligase middle domain protein |
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| Protein accession | YP_002946336 |
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| Protein GI | 239817426 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.157405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTCCT TCTCCGACCA GCTCCATGCC TGCCACGAGC GCCTGGCCTC AGTGTGCGCG
GCGCTGCCGG CGCCTTATCC GGCCTTCACG CTTTTCTTCT CGGTGAGCGA CGGGTCGCAG
CGCGCGCACG TGGTGCACGC GCGCGCGGCC GATTTCGAAA CCGCATGGCA TGAAGGCGCC
GAGGCCGTGG AGCGCTGGGT GCGCAACTGC GGCATCGTCT CGCCATGGCT GCGCATCGAC
TGGGTCGAGG GCGCAAGCCC GATCGACTGG GCGCAGTTCA AGGCGCAGCT CGCCGGCGTC
AAGCGCAACT ATTTCCGCCT GGGCCTGGCC TTCGACCAGG ACTTCGAGAC CGCGTTCACC
GAGCAGGAGC TCAACGCCAA CGCCATGCTG AGCGGCGATT CGACCATTGC GCATGCAGTG
GTGAATGCGC GCAACTTCGA GGCCTATGCC CAGGCGCGCT TCGCACGCGC GCTGCCGCTC
GAGCTGCCGG CCGACCAGCG CGTCTACCTG CTCGCGACCG TGGGCGTGTT CTGCCAGGCC
GACTGCGTGG TGCACAAGCT CGTGGGCACG GGGCTCGATG CCGGACGGCG CCAGGCACCG
GCGCTCGCGC CGCAATCGGC GCTCGACCTG GTGCGCAGCG GCGCCTCGTA CCTTGCGCGC
CAGGTGCAGG ACGACGGGCT CTTCGTGTAC GGCTACTTTC CGTGCTTCGA CCGCCGCATT
CCAACCTACG ACGCGATGCG CCATGCGAGC GTGCTCAGCG CCATGATCGA GGCGTGGGAG
CTCGTGCGCG ACGACAAGCT GCGCCTGGCC ATCGACCGCG CGCTCGACCA TCTCGCGAAC
ACGCTCATCC GCAGCTACAC GCTGGCCGAC GGCACCGAGG TCGCCTTCCT CGTCGACACC
GGCGAAGAGA TCCGGCTCGG CGGCAATGCC GCCTGCGTGC TGGCCCTGGT GAAGTACTGC
GAGGCGATGG ACACGCGCGA CTGGCTGCCG CTTTTGGAGA AGCTGGCGCT GGGCATCGCG
TCGCTGCAGG ATGGCGCCAC CGGCAGCTTC AGCCACGTGC TGCATGCCGG CGACCTGCGC
GTGAAGCAGG CCTCGCGCGT CATCTACTAC GACGGCGAGG CGGCCTACGG CCTCATGCGC
CTGTACGGCC TCACGCGCGA CGCAAGGTGG CTCGCCGTGG TCGAGAAGGC CTTCGACCAC
TTCTTTGCAA GCCAGCACTG GCAGGCGCAC GACCACTGGC TGAGCTGCTG CGTCAACGAG
CTCACGCGCT GGAGCCCGCA GGAAAAGTAC TTTCGCTTCG GCCTGCAGAA CGTGGCCGGC
TACCTGGACT TCGTGCTCGA CCGAAAGACC ACCTTTCCGA CGCTGCTCGA ACTCATGCTT
GCGGCCCAGC AGATGCTGCA GCGCCTGGAG GCCACGCCCG CCATGCGGCA CCTGCTCGAC
GAGCTCGACA CCGAGAAGTT CTACCGCGCG CTGGAGTACC GCGCCCACTA CCTGCAGAAC
GGCTTCTTCT GGCCCGAGAT GGCGATGTAC TTTCGCCGGC CCTCCACCAT CGTCGGCTCC
TTCTTCATCC GGCACCACGC GTTCCGGGTG CGCATCGACG ATGTGGCGCA GTACGTGTCG
GGCTTCGTGG CCTATCGCCG CTACCTGCTG GAGCGCCCCG CCGTGCCCGG CGCCGGCAGC
GCGAGGGACG ACGGTGCCGC CGCCTGGACC GCGGGCGAAA TGGCGCGCGT GACCGGCGGC
GAATGGGTGG TGCGCCCGGA AGACGGCTGG CGCGCCAGCG GCGTGACGCA GCGCTCCTTC
CTGCGCAAAG GCCGCGTGGT GTTCGAGCAC CAGGCGCGGC CCTCGAAGAC GCCGCTGGCC
GCGGTGGCGC TCAAGGGCGT GCTGCAGCCG GCCGCCGCCG TGCTGTGCAC CGATCCCGCA
CCGCACCTCG ACAAGCGGGT GCCGGTGCTC CAGGTGGACG ACGTGCCGCA GGCCGTGCTT
GCGCTGGGCG CGCATGCGCG CACCGAGTTC ACGGGGCGCG TCTGCGGCGT GCTGGGCAGC
GGCACCGCCG GCAGCACCGT GGCCGCGATG CTGGCCGACG CCCTGGCCGT GTGGGGCGAG
GTCGGCCGCC CCGAAGGCAA CGTCAGCCTG CCCTCGGGCA TGGCCTGGAA CCTGACCTGC
ATGCCGCGGC ATGCGGCCTA CTGGGTGCTG GAGATGGGAT CGCCGCACAT GCTGGCCACG
GCCCAGCTGG TGCGGCCGAT GCTGGCGGTG GTGACGGGGC TGTCGGCCGC GTCGCAAAAG
CACCGCGGGC CTTCGGAAGC CGCCGCGCAC ATGGACAGCC GCATCTTCGA GGGCATGGCG
CCCGGCGACA GCGCGGTGCT GAACCGCGAC CTCCCCGAGT TCGCGACCTT TGCCGAAGCC
GCCATGGCGC ACCAGCTGCA GATCGTGACC TATGGCGAGC ACAAGGACGC CGACGTGCGG
CTGCTCTCGT TCGACCACGG CGAGGTGCAG GCCCAGGTGC TCGGCGAGCC GTTCCAGCTT
CGCCTCAATG CGCCGGGGCG CCACATGGGC GCGAGCGCCG TGGCCGCGCT GGCGGCCCTG
CAGGCGATGC GCCTGAAGCT GGCCGCCGCG GTCGAGCCCT TCGCGCAGTT CGAGCCGCCG
GGCGGACGCG GCGCGCTGCA CACCATCCAC ATCGGCGGGG GCAGCTTCAA GCTGATCGAC
GAGACCTACG ACGCCAACCC GAGCTCGATG CGCGCCGCGC TCGAGCTGCT GTCGCAGGCG
CCCTGCGAGC CGGCCCGCCG CGTGGCGATC CTCGGCGACA TGCAGGAGCT CGGCCCCGCG
GCGCAGCGGC ACCACCTGGA CCTGGAGCCG GAGCTGCTCG CATCGCAGCC CGACCGCGTG
CTGTTGTGCG GCCCGCTGAT GCGGGCGCTG CATGCGCGCA TCCGCACCAA GGTGCGCTCG
CATTGGTTCG TCGACGTGTC CGATCTGTCG ACCGCGCTGG GCGGCCTGCT GCAGCCGGGC
GACTGGGTGC TGGCCAAGAG TTCTGCCGGT GTCGGCCTGT CCCGGCTGGC CCGGGTTCTG
AAAGCATTGC CATGA
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| Protein sequence | MMSFSDQLHA CHERLASVCA ALPAPYPAFT LFFSVSDGSQ RAHVVHARAA DFETAWHEGA
EAVERWVRNC GIVSPWLRID WVEGASPIDW AQFKAQLAGV KRNYFRLGLA FDQDFETAFT
EQELNANAML SGDSTIAHAV VNARNFEAYA QARFARALPL ELPADQRVYL LATVGVFCQA
DCVVHKLVGT GLDAGRRQAP ALAPQSALDL VRSGASYLAR QVQDDGLFVY GYFPCFDRRI
PTYDAMRHAS VLSAMIEAWE LVRDDKLRLA IDRALDHLAN TLIRSYTLAD GTEVAFLVDT
GEEIRLGGNA ACVLALVKYC EAMDTRDWLP LLEKLALGIA SLQDGATGSF SHVLHAGDLR
VKQASRVIYY DGEAAYGLMR LYGLTRDARW LAVVEKAFDH FFASQHWQAH DHWLSCCVNE
LTRWSPQEKY FRFGLQNVAG YLDFVLDRKT TFPTLLELML AAQQMLQRLE ATPAMRHLLD
ELDTEKFYRA LEYRAHYLQN GFFWPEMAMY FRRPSTIVGS FFIRHHAFRV RIDDVAQYVS
GFVAYRRYLL ERPAVPGAGS ARDDGAAAWT AGEMARVTGG EWVVRPEDGW RASGVTQRSF
LRKGRVVFEH QARPSKTPLA AVALKGVLQP AAAVLCTDPA PHLDKRVPVL QVDDVPQAVL
ALGAHARTEF TGRVCGVLGS GTAGSTVAAM LADALAVWGE VGRPEGNVSL PSGMAWNLTC
MPRHAAYWVL EMGSPHMLAT AQLVRPMLAV VTGLSAASQK HRGPSEAAAH MDSRIFEGMA
PGDSAVLNRD LPEFATFAEA AMAHQLQIVT YGEHKDADVR LLSFDHGEVQ AQVLGEPFQL
RLNAPGRHMG ASAVAALAAL QAMRLKLAAA VEPFAQFEPP GGRGALHTIH IGGGSFKLID
ETYDANPSSM RAALELLSQA PCEPARRVAI LGDMQELGPA AQRHHLDLEP ELLASQPDRV
LLCGPLMRAL HARIRTKVRS HWFVDVSDLS TALGGLLQPG DWVLAKSSAG VGLSRLARVL
KALP
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