| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4454 |
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| Symbol | |
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| ID | 7972742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4695694 |
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| End bp | 4697133 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795043 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_002946331 |
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| Protein GI | 239817421 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.423986 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCCC CCGCCAACTT CGACGAACTC GACCTCTTTG TCTGGGAAGG CAAGGCCGAC
ATCCTCGACC GTATCGCGCG GTGCATGGCG AGCTTCGACG TGGAGGTGAT CCGGGCCGAT
GGCTTGCCGC CTCCGCAGCA GGATCGCGGC ACTGCGCTTC GGCCTTCGGT GGCCATCCTC
AGCGTGACGG TCATCGACAG CGGCGGCCTT GCGCATGCCA CCGAGCTGCT GCAGGGCATG
CCGGTAATCT GGGTGGCCGC GGCCTCGCGG GAGCGGGACT CGCGCACCTA TCCGCCCGAG
TACCTGCACG TGCTGCCCTA CGACTTCACC TGCGCCGAGT TGCGCACGAT GGTGGCCAAG
CTGGTGCGGC AGCTGCGTGC GCGCGACGTG GCGCCGCAGG CGCCCGATGT GCTGGTGGCG
CATTCGGATG CGATGAAGTC GCTGCTGGCC GAAGTGGGCG CCTTTGCCGA TTGCAACCAC
AGCGTGCTGG TGCGCGGCGA AACGGGCGTG GGCAAGGAGC GCATCGCGCA GCAGCTGCAC
CTGGGTCACC AGCACTACAG CAAGGGCGCG TTCGTGGCGG TGAACTGCGG TGCGATTCCT
GACGGGCTCT TCGAATCGCT CTTCTTCGGC CACACCAAGG GCTCGTTCAC GGGCGCCGTG
CATGCGCACC GCGGCTATTT CGAGCAGGCC ACGGGCGGCA CGCTGTTCCT GGACGAGATC
GGCGATCTGC CGCGCTACCA GCAGGTAAAA CTGCTGCGCG TGCTGGAAGA CAACGCGGTC
ACGCGGCTGG GTGCCACGGC GCCGATCCGG GTCGACTTTC GGCTGGTGGC GGCCACCAAC
CGCAACCTGC GCGAGATGGT GGCGAGCGGC GAGTTCCGCG CCGACCTGTT CTACCGGCTC
GCGGTGATCG AGCTGCATGT GCCCAGCCTG GAGGAGCGCG GGGAGATCGA CAAGATTGCG
ATCTTCAAGG CGCTCTTGGC CAATGTGCTG GGCGACGAGC TCGAGACGCT CGGGGAAACG
CCGCACTGGC TCAGCGATGC GGTGGCCGAG ACCTACTTTC CCGGCAACGT GCGGCAGCTG
CGCAACCTGG CCGAGCGGGT GGGCGTGATC GCACGGCAGC TGCACAGCTG GGACCAGAAC
CTGATCCAGC GCGCCATTGC GCTCACGCGC GGCACGCCGA CGCTGGCGGC AGGCGCTGCT
GCGGAGCGCA ACGGCCATGG CGGCGGCGGC ACCATGAACG GCGTGGCGCT CGACGGCAAT
GGCGATCGCA AGGGATGGAA CAGCAGCGAG CGCAACCGCA TCATCGCGGC GCTGGAGATC
AACGACTGGA AGCGCCAGGA CACCGCGCAG CACCTGGGCA TCAGCCGCAA GGTGCTGTGG
GAAAAGATGC GCAAGTACCA GATCCTCGAC GGCGAGCCCG GCATCCCCGA GGACGCCTGA
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| Protein sequence | MSSPANFDEL DLFVWEGKAD ILDRIARCMA SFDVEVIRAD GLPPPQQDRG TALRPSVAIL
SVTVIDSGGL AHATELLQGM PVIWVAAASR ERDSRTYPPE YLHVLPYDFT CAELRTMVAK
LVRQLRARDV APQAPDVLVA HSDAMKSLLA EVGAFADCNH SVLVRGETGV GKERIAQQLH
LGHQHYSKGA FVAVNCGAIP DGLFESLFFG HTKGSFTGAV HAHRGYFEQA TGGTLFLDEI
GDLPRYQQVK LLRVLEDNAV TRLGATAPIR VDFRLVAATN RNLREMVASG EFRADLFYRL
AVIELHVPSL EERGEIDKIA IFKALLANVL GDELETLGET PHWLSDAVAE TYFPGNVRQL
RNLAERVGVI ARQLHSWDQN LIQRAIALTR GTPTLAAGAA AERNGHGGGG TMNGVALDGN
GDRKGWNSSE RNRIIAALEI NDWKRQDTAQ HLGISRKVLW EKMRKYQILD GEPGIPEDA
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