| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4453 |
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| Symbol | |
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| ID | 7972741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4693896 |
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| End bp | 4695665 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644795042 |
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| Product | hypothetical protein |
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| Protein accession | YP_002946330 |
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| Protein GI | 239817420 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4655] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA AACCTGTGAT CTCCAGGCGC CGCAACGCTG GTCGACAGAT TCGTGGGTCG
ATTCTCGTGA ACACGGCCAT TGCCTTGAGT TTGATTGTTA TCACACTGAT TGGCACCGAG
CTCGGCTATC TCTTCTACAT GAAGAGAGAG CTGCAGAAAG CAACAGATCT CGCGGCCCTT
GCGGGGGCGA AAGAGATTTC ATATGCAGGC AGTTGCCCCT CAGCCAAGAC GGCTGCAAAA
CTCAGCGCGA ATGGCACCGG CAGCACAGAT CGGAATCGAA ACCTTCCGAT TTCATTCTCT
CTCGAAGACG CCGAGATCGA ATGCGGCCAA TGGGATCCAG CGAAGACCAC TTCCGACCAT
TTCGATTCGG CCCCCCCTGA TCAGCAGAAC GCGATTCGCA TCACACTCAA CAGAACGCCC
GCCACTCTGC TTTCCTTCTT CGAAGGCAAT CGAACGATTC AGACCAAGGC AGTTGCGACG
AACGATCCGA TCGCCGCCTT CTCTATAGGA ACGGGCGTTG CCAGCCTTGA CGAAGGCGCA
GTCAATAGCC TGTTGAACGG GCTGCTGGGC ACCGGAAATA AGATAAAGCT GAGGGTCATC
GATTACCAGG GCCTAGCAAC CGGACAGGTG CGGCTGCTCG ATCTGGTGTC CGCAGTGCCG
AACGTCGGCA CGGTGAGTCA ATTGCTCGAT ACACAAATCA GCATGAACGA CTTCATGCTG
GCAATGGTCC AGGCACTTGG GAGTTCAAAT GCCGTCGCTG TGCAGGCGCT CAACGCGATC
ATTGCGACGA ACGTAAAGCC CTTGAACGTG AGGATTGGCG ACGTGATCAA GGTCACTACC
CCCTCACCAG AATCTGCGGC AAATGCGTCG ATCAACGTTC TGGAGTTGCT AACAACATCG
GCCCAAATTG CCAATGGCAG CAACTTAGTG AATCTTGACA CAGCGATCGA TTTCGGCGCC
CTCGCCCAAG CCAAAGTCCA ATTGGTCATC CTTGAACAGC CGTCGATTGC CATAGGTCCC
GCAGGTAAAG ACAGTCAAGG CAATTGGCGC ACGCAAGCAC ACTCGGCTTC GGTGCGTCTG
TTCCTTGACA CTAAGATAGT TGATACCAGC AGCATTCCAG GAATTTCGGG GCTTCTAAAC
GTGTCGCTAC TTCGACTTCC AATCTATATT GAAGTTGCGC CAGGAGATGC GAGATTGAGC
AGCATTCAAT GTGCAGCTCA GAAAAAGGAT TGTCGTGTAC AGATCGAGGC AAGGCCGGGC
TTAGGTACCG TATGCATTGC GGGTGTCACT AGCGCCATGA TGCTGAATAG GACCACTCCT
ATTAATTGCA CGACTTTGCC GAGCGCGACA ATCACAGAGA TCAGCTTCCT AGGAATCACC
GTGCTGGAGA TCCAAGCCAA GGTGCCCGTG CAAGCAGCGA TCCCAGACAC GGGGTATGAA
ACTCTCACGT ACAACGGCGT GACCGGCGAC TCAGACGATG TGCAAACCAC GAACTCCAAT
GCGGTCGGAG CCGTTCTCTC GGGAGCCTTG GGCAATTTTT CCAGCGCGAG CAAGTGGACG
TTGACACCAG TTGTCCTGGG CGCTCTTCCG GTACCCGTTG GCTCCATTTT GTCGCCCTTG
CTCAGCTACG TACTGAGTAT TCTGAGTCCC TTATTCAGCT CGCTTGACGC CATTGTTGTT
CCATTGCTGA ACCTGCTCGG AGTGCAACTC GGTTACGCCG ACGTCCATCT TCTGTCCGTG
ACATGCGGTG AAGCAAAACT CGTCTATTAA
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| Protein sequence | MSTKPVISRR RNAGRQIRGS ILVNTAIALS LIVITLIGTE LGYLFYMKRE LQKATDLAAL
AGAKEISYAG SCPSAKTAAK LSANGTGSTD RNRNLPISFS LEDAEIECGQ WDPAKTTSDH
FDSAPPDQQN AIRITLNRTP ATLLSFFEGN RTIQTKAVAT NDPIAAFSIG TGVASLDEGA
VNSLLNGLLG TGNKIKLRVI DYQGLATGQV RLLDLVSAVP NVGTVSQLLD TQISMNDFML
AMVQALGSSN AVAVQALNAI IATNVKPLNV RIGDVIKVTT PSPESAANAS INVLELLTTS
AQIANGSNLV NLDTAIDFGA LAQAKVQLVI LEQPSIAIGP AGKDSQGNWR TQAHSASVRL
FLDTKIVDTS SIPGISGLLN VSLLRLPIYI EVAPGDARLS SIQCAAQKKD CRVQIEARPG
LGTVCIAGVT SAMMLNRTTP INCTTLPSAT ITEISFLGIT VLEIQAKVPV QAAIPDTGYE
TLTYNGVTGD SDDVQTTNSN AVGAVLSGAL GNFSSASKWT LTPVVLGALP VPVGSILSPL
LSYVLSILSP LFSSLDAIVV PLLNLLGVQL GYADVHLLSV TCGEAKLVY
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