| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4449 |
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| Symbol | |
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| ID | 7972737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4690577 |
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| End bp | 4691536 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644795038 |
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| Product | type II secretion system protein |
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| Protein accession | YP_002946326 |
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| Protein GI | 239817416 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTCT CACCCAATCA GTTGGCCACC ATCAGCCTTG CGCTACTCGC TCTCGGCTTG
ATGATCGCGG CCGGCGCACT GATTGCGGCG GAGCTGCGGC GCGCGCGGAG TGGCCAGGTG
ATAGGCCGAG CCCTCCAACG GGATGCGACC GGCCAAGTCG ATCTCAAGAC GCCTGTCGAC
GCCGAATCCA ACTCGTCTCT TCGCGCTGAC ATCGAACTTC CTTTTCATTG GCTGGACTCG
AAGATCGGGC GGGCCTTCGT GGCCGACGAA GACCGGCGCC TCATCGACCA ATGCGGATTT
GCCTCCAAAC AGGCGCAGTT GATCTTTCTC GTCACCCGCC TGCTGCTCGC GTTTCTGTTG
CCAATAATCA GCTACATCGT CTGGAAGAGC CATCTGACCG AACGTACGGT GCTTGTGGTC
CTGGCCGCGG CGTTCGTGGT CGGATTCATG ACTCCTAAAT GGGCGCTCGG TCGCATCGCC
GCCGGCAGAC GCGAGCGCAT CGCGCGCGAA CTCCCACTCT TTGTTGATCT GCTGAAACTC
CTTCAGGGCG TGGGCCTTAG CCTTGATCAA AGCCTGCAGA TCATGGCAGA CGATTTCTCC
CATGTCTTGC ATGTGCTTGG CCATGAATTG ACGTTTGCCA ATCGTCAATA CAGCCAAGGA
CGAACACGCG AACATTCGCT TCATCGTCTT GCAACCCTCC ATGGAAATGA AGATCTCCGC
GGCCTGGTTT CTCTGCTCGT GCAAGTCGAT CGCCATGGGG GAGCCGTGCA AGAGCCGCTG
CGCATCTTCG GTGAGCGCTT GCGCGAACGG CGCCGCTCGG AAATGAAGGA GCGCATCGGA
AAGATCACCG TGAAGATGAC CGGCGTCATG GTGAGCACGT TGCTGCCCGC ACTCGTAATC
GTGACCGCGG GACCCGGCTT TATCGCGATC TTCCGGTCGC TAGGGGTAGT CGCCAAATGA
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| Protein sequence | MTFSPNQLAT ISLALLALGL MIAAGALIAA ELRRARSGQV IGRALQRDAT GQVDLKTPVD
AESNSSLRAD IELPFHWLDS KIGRAFVADE DRRLIDQCGF ASKQAQLIFL VTRLLLAFLL
PIISYIVWKS HLTERTVLVV LAAAFVVGFM TPKWALGRIA AGRRERIARE LPLFVDLLKL
LQGVGLSLDQ SLQIMADDFS HVLHVLGHEL TFANRQYSQG RTREHSLHRL ATLHGNEDLR
GLVSLLVQVD RHGGAVQEPL RIFGERLRER RRSEMKERIG KITVKMTGVM VSTLLPALVI
VTAGPGFIAI FRSLGVVAK
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