| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4448 |
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| Symbol | |
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| ID | 7970068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4689855 |
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| End bp | 4690580 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644795037 |
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| Product | type II secretion system protein |
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| Protein accession | YP_002946325 |
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| Protein GI | 239817415 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.778802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACGG CGTTGCCCGA GTGGTTGCTC GGGGTCATTC CACCCAAGGT TGCGACGATT
GCTGTAATCG GCATCCTGGT CTTGTGCTTG CTGGCAGGAC TCCTCGGCGG GGTGATTGCT
GCCGTCGGTG TGCTGCTCCT GCTTCTCCTC GCTTCTGTGT TCGCGGTATG GCTCCGGCTC
CAGAAAGTCC GGCGCCAGCT GATCAGCCAA CTGCCCGCCT ACATCGATGC CATGGTGCGC
CTGATCACCA TCGGCAACTC CACGCAGGCG GCATTTCAAC TTGCGATTGC GACGACCCAA
GCTCCTCTGC GCGGCCACAT GGAGCGCTCC GCCGCCCTGG TCCGCGCGGG TGTAGATCTC
GATCGCGCGC TACACCAGAC AGCGAACAAT GTGCGCGTGG AGGAGATGTT CCTGCTGGCA
TCCATCCTGG GGCTTGGCGT GCGCTATGGG GGTCGATCCG ATCTTTTGCT CGAGCGTGTT
GCCAACTTCA TGCGCGATCG TGAACAGGCA GAGCACGAAT TGGTCGCGAT GTCCGCGGAA
ACGCGGCTCT CCGCATGGAT CTTGGGTCTT CTTCCGCTGG GCGTGGGCAC GTTCCTGGTC
GTGGTCAACC CCGACTATTT TTTGAGCATG TGGAACGATG ACACCGGACG CATGCTGATC
TTCTCGTCCG CCGGACTACA ACTATTGGGC GCTTTCTTTC TGTATCGACT GGCGAGGCTG
GCATGA
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| Protein sequence | METALPEWLL GVIPPKVATI AVIGILVLCL LAGLLGGVIA AVGVLLLLLL ASVFAVWLRL
QKVRRQLISQ LPAYIDAMVR LITIGNSTQA AFQLAIATTQ APLRGHMERS AALVRAGVDL
DRALHQTANN VRVEEMFLLA SILGLGVRYG GRSDLLLERV ANFMRDREQA EHELVAMSAE
TRLSAWILGL LPLGVGTFLV VVNPDYFLSM WNDDTGRMLI FSSAGLQLLG AFFLYRLARL
A
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