Gene Vapar_4447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4447 
Symbol 
ID7974121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4688267 
End bp4689583 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content60% 
IMG OID644795036 
Producttype II secretion system protein E 
Protein accessionYP_002946324 
Protein GI239817414 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAACG ATATCGAATT TGCCGACGAC GACGAGGCGT TCATCAATTC CCAGCAGTTC 
CAGGACATCA AGAGCTGGAC ACATGACCAT CTGCTGAGCC GCATCGAAGA ACTCGGCGCC
GAGTTCGGGC GCTGGTCGCG CGCTTCGATC CAACAGTTTG TCGAACTCGA GGTCGACAGC
TTTGTGCGCC TGCGCCGCGT GCCAATCAAC GACCGCGAGA TGCAGCTTAT CTCCGACGCG
TTGACCAAGG AGCTTGCAGG CTTTGGGCCG TTGGAAGACC TGCTTAACGA CCCTGCGGTC
GAAGACATTT TGATCAACGG CTACCAGAAC GTATACGTGT CGCGCCATGG CATGCTCGAG
CGCGAGACCG TTCGATTTGC CGATGCGGAA CACGTGATGC GCATCGTGCG CCGCATCCTC
GCGCCGCTCG GTCGCCGGCT GGATGAATCC AACCCGATGG TCGATGCGCG GCTGCCCGAT
GGCGGCCGCA TCAACGTGAT CATCGAGCCG CTGGCCATTG ATGGCCTCTC GGTGTCGATC
CGCAAGTTCC GCAAGGAGCC GCTTACGCCG GCAGACATGG TGAAGCTCGG CACCTTCGAT
GCCGGCATGG CCCAGTTGCT CGAAATCGCA GTGCGGGCAC GTTGCAACGT GCTTGTGAGC
GGCGGCACAA GCTCCGGCAA GACTTCGCTC CTGAATGCGC TTGCAAGCTT CATCCCTTCA
CGCGAACGTG TGATCACCAT CGAAGATACG GCCGAACTTT CGCTCAGCAC CAGCCATGTG
GTTCGACTCG AAAGCCGGCC CGGCGGCTTC GACGGCACCG GTGTGGTGTC GATTCGCGAT
CTGCTGCGCA ACAGCCTGCG CATGCGGCCC GACCGGATCA TCGTCGGCGA AGTGCGCGGC
GCCGAAGTCA TCGAGATGCT GCAGGCCATG AACACGGGGC ACGAGGGTTC GATGGGCACC
ATTCACGCCA GTTCGCCACG CGAATGCCTG TACCGGTTGG AAATGCTTGC TGGTTTTGCG
GGTTACCAAG GCAGCGAAGT CAGTTTGCGC CGCCAGATTG CCAACGCCAT CGACTTCATT
GTCCAGATCG GCCGGCTCTC CAACGGCCAG CGGCGCATCA TTTCTCTCAG TGAAGTCACT
GGCGTCAATG ACAACGTAGT GGCGATGCAA GAGCTCTACC GCTACGAGCC AATCGTTTCG
CCAGATGGCG AAGAACGCGA TCGCTGGATC TCCCTCGGCA TTGCGCCTCA TTCGCCGAAG
ATCACCCGCT TCCGCCAGTC CATGACACGT GCGCAGAACG GAGAAAGCCG TGCGTGA
 
Protein sequence
MSNDIEFADD DEAFINSQQF QDIKSWTHDH LLSRIEELGA EFGRWSRASI QQFVELEVDS 
FVRLRRVPIN DREMQLISDA LTKELAGFGP LEDLLNDPAV EDILINGYQN VYVSRHGMLE
RETVRFADAE HVMRIVRRIL APLGRRLDES NPMVDARLPD GGRINVIIEP LAIDGLSVSI
RKFRKEPLTP ADMVKLGTFD AGMAQLLEIA VRARCNVLVS GGTSSGKTSL LNALASFIPS
RERVITIEDT AELSLSTSHV VRLESRPGGF DGTGVVSIRD LLRNSLRMRP DRIIVGEVRG
AEVIEMLQAM NTGHEGSMGT IHASSPRECL YRLEMLAGFA GYQGSEVSLR RQIANAIDFI
VQIGRLSNGQ RRIISLSEVT GVNDNVVAMQ ELYRYEPIVS PDGEERDRWI SLGIAPHSPK
ITRFRQSMTR AQNGESRA