Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4447 |
Symbol | |
ID | 7974121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4688267 |
End bp | 4689583 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644795036 |
Product | type II secretion system protein E |
Protein accession | YP_002946324 |
Protein GI | 239817414 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAACG ATATCGAATT TGCCGACGAC GACGAGGCGT TCATCAATTC CCAGCAGTTC CAGGACATCA AGAGCTGGAC ACATGACCAT CTGCTGAGCC GCATCGAAGA ACTCGGCGCC GAGTTCGGGC GCTGGTCGCG CGCTTCGATC CAACAGTTTG TCGAACTCGA GGTCGACAGC TTTGTGCGCC TGCGCCGCGT GCCAATCAAC GACCGCGAGA TGCAGCTTAT CTCCGACGCG TTGACCAAGG AGCTTGCAGG CTTTGGGCCG TTGGAAGACC TGCTTAACGA CCCTGCGGTC GAAGACATTT TGATCAACGG CTACCAGAAC GTATACGTGT CGCGCCATGG CATGCTCGAG CGCGAGACCG TTCGATTTGC CGATGCGGAA CACGTGATGC GCATCGTGCG CCGCATCCTC GCGCCGCTCG GTCGCCGGCT GGATGAATCC AACCCGATGG TCGATGCGCG GCTGCCCGAT GGCGGCCGCA TCAACGTGAT CATCGAGCCG CTGGCCATTG ATGGCCTCTC GGTGTCGATC CGCAAGTTCC GCAAGGAGCC GCTTACGCCG GCAGACATGG TGAAGCTCGG CACCTTCGAT GCCGGCATGG CCCAGTTGCT CGAAATCGCA GTGCGGGCAC GTTGCAACGT GCTTGTGAGC GGCGGCACAA GCTCCGGCAA GACTTCGCTC CTGAATGCGC TTGCAAGCTT CATCCCTTCA CGCGAACGTG TGATCACCAT CGAAGATACG GCCGAACTTT CGCTCAGCAC CAGCCATGTG GTTCGACTCG AAAGCCGGCC CGGCGGCTTC GACGGCACCG GTGTGGTGTC GATTCGCGAT CTGCTGCGCA ACAGCCTGCG CATGCGGCCC GACCGGATCA TCGTCGGCGA AGTGCGCGGC GCCGAAGTCA TCGAGATGCT GCAGGCCATG AACACGGGGC ACGAGGGTTC GATGGGCACC ATTCACGCCA GTTCGCCACG CGAATGCCTG TACCGGTTGG AAATGCTTGC TGGTTTTGCG GGTTACCAAG GCAGCGAAGT CAGTTTGCGC CGCCAGATTG CCAACGCCAT CGACTTCATT GTCCAGATCG GCCGGCTCTC CAACGGCCAG CGGCGCATCA TTTCTCTCAG TGAAGTCACT GGCGTCAATG ACAACGTAGT GGCGATGCAA GAGCTCTACC GCTACGAGCC AATCGTTTCG CCAGATGGCG AAGAACGCGA TCGCTGGATC TCCCTCGGCA TTGCGCCTCA TTCGCCGAAG ATCACCCGCT TCCGCCAGTC CATGACACGT GCGCAGAACG GAGAAAGCCG TGCGTGA
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Protein sequence | MSNDIEFADD DEAFINSQQF QDIKSWTHDH LLSRIEELGA EFGRWSRASI QQFVELEVDS FVRLRRVPIN DREMQLISDA LTKELAGFGP LEDLLNDPAV EDILINGYQN VYVSRHGMLE RETVRFADAE HVMRIVRRIL APLGRRLDES NPMVDARLPD GGRINVIIEP LAIDGLSVSI RKFRKEPLTP ADMVKLGTFD AGMAQLLEIA VRARCNVLVS GGTSSGKTSL LNALASFIPS RERVITIEDT AELSLSTSHV VRLESRPGGF DGTGVVSIRD LLRNSLRMRP DRIIVGEVRG AEVIEMLQAM NTGHEGSMGT IHASSPRECL YRLEMLAGFA GYQGSEVSLR RQIANAIDFI VQIGRLSNGQ RRIISLSEVT GVNDNVVAMQ ELYRYEPIVS PDGEERDRWI SLGIAPHSPK ITRFRQSMTR AQNGESRA
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