| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4444 |
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| Symbol | |
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| ID | 7974118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4684518 |
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| End bp | 4685513 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795033 |
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| Product | Flp pilus assembly protein CpaB |
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| Protein accession | YP_002946321 |
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| Protein GI | 239817411 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAATC TCACCAAAAT CGTCGCCGCC ATCCTGGTCC TTCTGGCCAT TGCGCTAGGT
GGCTATGCCT GGATGCTGGG TCGGCAGGCG CCTGCGAAAA CAGCGGTGAC GGCGACAGCC
CCATCCGAAC AGCCCCAGAG CCAACAGGCG CCCACCTACC CGGTCGTGGT CGCCGCGAAG
CCATTGCCCG CGGGTCAAGC CATCCCGGCC GATGCCCTGC GCGTCGAACG CCTCACCGTC
AATCCGGCCG GCGCCTTCCA GGAAGTAGCA ACGGCGACCG GTCGCGTCCC GGTTATTGAT
CTCTCCGAAG GTTCGCCATT GATGGACAAC CAGCTGGTTT CGGGTCTCGC ACTTCGCGTG
GGAGAAGGCG AGCGCGCTGT TGCCATCAAG GCCGACGAAA TCATGGGAGT CGGCAACAAG
ATCCAGCCCG GCGATTTCGT CGACGTATTC ATCACATTGA AGTCCGATGG CAAGGACGTG
GACCGCAGCC AGGCGCGCTT GCTTCTCTCG CGCAAGCGCG TGCTCGCTTT CGGCTCTGCA
TCCGTCGATG GTCTTCCTTC AAAAACGACG GACAAGCAGC AACAGCAAGC TCAGCGGACC
GAAGCACCCC GAACTGCGGT GCTTGCCGTG TCCGTGGACG ATGTGAATCG CCTCACGATC
GGTGATGCGA CAGGTCGGCT GATGCTGGCG CTGCGCAACC CTAACGATGT GGCCGAGCCC
GACCCCAAGC TTTTCGCCGA TCTGCCGACG GCGTTGCAGC CTGCATCGGT CCGGCCTGGC
GAGCCTCGTC GTGCTTCTTT GGAAGGCCTC GATCGCGCGC AGGCCGGCCT GACCACCGCA
GATCTCGTGA CTGGCGGCAA GGTCACCGCA GGCCGCCCGG TGACCGAAGC ACGCGCCATC
TCCAGCGGCA CACGGACGCC CCAGCCGGGT AGCGCCCGCG GTGGTCTTCA GGTCGAAGTC
ATTCGCGGCG ATCGCAGCGA AACCATAAGT TATTGA
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| Protein sequence | MINLTKIVAA ILVLLAIALG GYAWMLGRQA PAKTAVTATA PSEQPQSQQA PTYPVVVAAK
PLPAGQAIPA DALRVERLTV NPAGAFQEVA TATGRVPVID LSEGSPLMDN QLVSGLALRV
GEGERAVAIK ADEIMGVGNK IQPGDFVDVF ITLKSDGKDV DRSQARLLLS RKRVLAFGSA
SVDGLPSKTT DKQQQQAQRT EAPRTAVLAV SVDDVNRLTI GDATGRLMLA LRNPNDVAEP
DPKLFADLPT ALQPASVRPG EPRRASLEGL DRAQAGLTTA DLVTGGKVTA GRPVTEARAI
SSGTRTPQPG SARGGLQVEV IRGDRSETIS Y
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