| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4443 |
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| Symbol | |
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| ID | 7974117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4683938 |
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| End bp | 4684435 |
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| Gene Length | 498 bp |
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| Protein Length | 165 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795032 |
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| Product | peptidase A24A prepilin type IV |
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| Protein accession | YP_002946320 |
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| Protein GI | 239817410 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAATCG CTTTTCTCCT GTGGCTGATC CTTGTCGTCG TTTATGACTT CCGGATGCGC
CGCATTCCCA ATTGGCTTGT ACTCGCGGGT GCTGCCCTCG CATTCGCAGC CTTGGCAACG
GGAGCGGGGC CCCTCGGACA GGATTGGCAG GCTGCACTTT TCGGTGCAGG GGCGGGGTTC
GCTACCCTGC TGCTTTTCTA CGCCACGGGC CTCATGGGAG CGGGCGACGT GAAGTTCGCC
GGCGCCCTGG GGCTGTGGGT CGGCTTACCG GCTTTGGCCT CGATCTGGAT CGTTGCCAGC
TTGGTAGCAG GCGCCCACAG CATCCTCTGG CTCGCACTAA AGCGCTGGCC TTTCTTTCCT
CGGCTCGCCC TGGTGCTTGC TGGCCCTTCG CGCGTACCCG AATCCGGCAT CCCATCCGGC
CGGGTTCGCC TCATTCCTTA CGCGGCCTAT CTCGCATTGA CCGCTGCGGC GTGGATGGTT
TGGGGGCGAC AGAGTTAG
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| Protein sequence | MKIAFLLWLI LVVVYDFRMR RIPNWLVLAG AALAFAALAT GAGPLGQDWQ AALFGAGAGF
ATLLLFYATG LMGAGDVKFA GALGLWVGLP ALASIWIVAS LVAGAHSILW LALKRWPFFP
RLALVLAGPS RVPESGIPSG RVRLIPYAAY LALTAAAWMV WGRQS
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