| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4436 |
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| Symbol | |
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| ID | 7974110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4676090 |
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| End bp | 4676875 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795025 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002946313 |
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| Protein GI | 239817403 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACCC ATACCCCGCA AACAGAGACG CCCGCCCCCG GCGACAGCTA CGTGCAGTCG
TTCGCGCGCG GGCTCCAGGT GATCCGCTCG TTCAGCGAAA GCGCGCCGCG CCAGACGCTC
AGCGAGGTGG CGGCCGCCAG CGGACTCACG CGGGCGGGCG CGCGGCGCAT CCTGCTCACG
CTGCAGACGC TGGGCTACGT GGTGAGCGAC GGCAAGCTCT TCACGCTCAC GCCGCGCATC
CTCGACCTGG GCTTTGCGTA TCTTTCTTCG ATGCCGATCT GGAACCGCGC CGAGCCCGTG
ATGGAAGCGC TGGTGCAGCA GGTGCAGGAG TCCTGCTCGG CCGCGGTGCT GGACGCCACC
GACATCGTCT ACGTGATGCG CGTGCCCACC AAGAAGATCA TGCACATCAG CCTGGGCGTG
GGCTCGCGCC TGCCGGCCTA CTGCACCTCG CTTGGCCGGC TGCTGCTGGC CGACCTGGAC
GACGAAGAGG TGCGCGCGCG GCTCGAGGCC TCCGATCGCC AGGCGCTCAC CAAGCACACG
GTGACCGACG TGGACGCGCT CATGGCCAAG GTGGCGCAGG CGCGCAGGCA GCAGTGGTGC
CTGGTGAACC AGGAGCTGGA AGAAGGCCTG ATCTCCGTGG CCGCGCCCAT CGTCAACCGC
CAGGGCCGCA TGGTGGCCGC GCTGAACATC AGCGGGCAGG CCAATCGCAC CAGCGCGAAG
GTGATGCAGG AGACGATATT GCCGGCGCTG CGCGAAGCGG CAGACCGGAT TTCGCGCTTG
CTCTGA
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| Protein sequence | MATHTPQTET PAPGDSYVQS FARGLQVIRS FSESAPRQTL SEVAAASGLT RAGARRILLT
LQTLGYVVSD GKLFTLTPRI LDLGFAYLSS MPIWNRAEPV MEALVQQVQE SCSAAVLDAT
DIVYVMRVPT KKIMHISLGV GSRLPAYCTS LGRLLLADLD DEEVRARLEA SDRQALTKHT
VTDVDALMAK VAQARRQQWC LVNQELEEGL ISVAAPIVNR QGRMVAALNI SGQANRTSAK
VMQETILPAL REAADRISRL L
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