| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4431 |
|---|
| Symbol | |
|---|
| ID | 7974105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4671826 |
|---|
| End bp | 4672308 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644795020 |
|---|
| Product | transcriptional regulator, MerR family |
|---|
| Protein accession | YP_002946308 |
|---|
| Protein GI | 239817398 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.290243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCA AGCCAGCAGA ACCACCGCAC GATTTTCCCG CCACGCTGTC TGTGGGCGAG
GTCGCGCACC GCAGCGGGGT GCCGGTGTCC ACCCTTCATT TCTACGAATC CAAGGGGCTC
ATCGCGAGCC ACCGGGCGCC CAGCAACCAT CGCCGCTATG GGCGAGACGT GCTCCGGCGC
GTGGCGTTCA TCCGCGTCGC GCAGCGCGTG GGCATTGCGC TGGCCGACAT CGCCGATGCG
CTGGCCACGC TGCCCACCTC GGCCGCGCCC AGCCGCGCAG ACTGGGCGCG GCTTTCGGCC
GGCTGGCGCG CCGAGCTGGA CGAACGCATG GCCCAGCTCA AGAAGCTGCG CGACACGCTG
GACGACTGCA TCGGCTGCGG CTGCCTGTCG ATCGACCGCT GCCGCCTGCG CAACCCGGCC
GACAAGCTGT CGTCGGAAGG GCCCGGCGCC CGCCGCCTCG TGATCAGGCG CGCGGAAGAC
TGA
|
|---|
| Protein sequence | MKSKPAEPPH DFPATLSVGE VAHRSGVPVS TLHFYESKGL IASHRAPSNH RRYGRDVLRR
VAFIRVAQRV GIALADIADA LATLPTSAAP SRADWARLSA GWRAELDERM AQLKKLRDTL
DDCIGCGCLS IDRCRLRNPA DKLSSEGPGA RRLVIRRAED
|
|---|
| |