| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4413 |
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| Symbol | |
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| ID | 7974087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4653544 |
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| End bp | 4655037 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795002 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_002946290 |
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| Protein GI | 239817380 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.504324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACA CACTCGACAA CAACCGCAAG CGCTGGCTCG CACTGATGGT GCTGTGCCTG
GGCGTGCTGA TGATCGTGCT CGACACCACG ATCGTGAACG TGGCGCTGCC CTCGATCCGC
ACCGACCTCG GCTTCACCGA GACCTCGCTG GTCTGGGTGG TGAATGCCTA CATGCTGACC
TTCGGCGGCT TCCTGCTGCT GGGCGGGCGG CTGGGCGACC TGTACGGCCA CCGCAGGCTC
TTCCTGATCG GCCTCGTGCT GTTCACGCTG GCCTCGCTGG CCTGCGGCCT CGCCAACTCG
CAGGCGCTGC TGGTCGCGGC GCGCGCGGTG CAGGGGCTGG GCGGCGCGGT GGTCTCGGCG
GTGGCGCTCT CGCTGATCAT GAACATCTTC ACCGAGCCGG CCGATCGCGC CAAGGCGATG
GGCGTCTACG GCTTCGTCTG CGCGGGCGGC GGCAGCATCG GCGTGCTGCT GGGCGGACTG
CTCACGAGCA CGCTGAGCTG GCACTGGATC TTCCTGGTGA ACCTGCCGAT CGGCGTGGCC
GTGTATGCGC TGTGCCTCGC GCTGCTGCCC TCGGCGCGCG GCCATGCCCA TGGCGAGAAG
CTCGACGTGG CCGGCGCCGT GGCGGTGACG CTGTCGCTGA TGCTCGCGGT GTATGCCATC
GTCAACGGCA ACGAGGCCGG CTGGCAGTCG GCGCAGACGC TCGGCCTCTT GGGCGCCGCG
GTGGTGCTGA TGGTGCTCTT CATCGCCATC GAGGCCCGGG TGCAGCATCC GCTGATGCCG
CTCGGCCTGT TCCGGCTGCG CAGCGTGTCG GTCTCCAACG TGGTGGGCGT GCTGTGGGCG
GCCGCCATGT TCGCGTGGTT CTTCATTTCC GCGCTCTACA TGCAGCTGGT GCTGGGCTAC
ACACCGATGC AGATCGGCCT GGCGTTCCTG CCGGCCAACC TGATCATGGC GCTGTTCTCG
CTGGGCATCT CGGCCAGGCT GGTGATGCGC TTCGGCATTC GCCGGCCGCT GTCCGTGGGG
CTGTGGCTCG CGGCCATCGG GCTGGCGCTG TTTGCGCGGG CGCCGGTGAA CGGCAGCTTC
ATGGTCGACG TGCTGCCGGG CATGCTGCTG CTGGGCCTGG GTGCGGGCAT GGCGCTGAAC
CCGCTGCTGC TCGCGGCCAT GAGCGAGGTG AGCCCGACCG AGTCGGGCCT GGCCTCGGGC
GTGGTCAACA CGGCCTTCAT GATGGGCGGC GCGCTCGGGC TGGCGGTGCT GGCCAGCGCG
GCCGTCGCGC GCACCGCGTC GATGGAGGCG GCCGGCGCAA AGCTGGCGCT CGCGCTCACC
GGCGGCTACA ACCTCGCGTT CCTGATCGGC GCCGTGTTCG CGGCCGTGGC GGGGCTGCTC
GGGGCCGTGC TGCTTCGCAC CGCATCGCCA GGGTCCACCC AGAACAACGA AGACAACAAC
AGCAAGGGGT CCGCGGCATC CGCAGGCACG GCCAACCGTG CGGCGGCGTC CTGA
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| Protein sequence | MTDTLDNNRK RWLALMVLCL GVLMIVLDTT IVNVALPSIR TDLGFTETSL VWVVNAYMLT
FGGFLLLGGR LGDLYGHRRL FLIGLVLFTL ASLACGLANS QALLVAARAV QGLGGAVVSA
VALSLIMNIF TEPADRAKAM GVYGFVCAGG GSIGVLLGGL LTSTLSWHWI FLVNLPIGVA
VYALCLALLP SARGHAHGEK LDVAGAVAVT LSLMLAVYAI VNGNEAGWQS AQTLGLLGAA
VVLMVLFIAI EARVQHPLMP LGLFRLRSVS VSNVVGVLWA AAMFAWFFIS ALYMQLVLGY
TPMQIGLAFL PANLIMALFS LGISARLVMR FGIRRPLSVG LWLAAIGLAL FARAPVNGSF
MVDVLPGMLL LGLGAGMALN PLLLAAMSEV SPTESGLASG VVNTAFMMGG ALGLAVLASA
AVARTASMEA AGAKLALALT GGYNLAFLIG AVFAAVAGLL GAVLLRTASP GSTQNNEDNN
SKGSAASAGT ANRAAAS
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