Gene Vapar_4409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4409 
Symbol 
ID7974083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4651271 
End bp4651933 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content73% 
IMG OID644794998 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002946286 
Protein GI239817376 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.182996 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCCCC GCATCGTCCC GCCAGCCCCG AACCCGCCCG CGGCCCGCAG CACCTACCGC 
CATGGCGACC TGCGCCGCGC GCTGCTCGAC GCTGGGATCG AACTGGCGCG CGACGGCGGC 
CCCGATGCGG TGGCGCTGCG CGAGGTGACG CGCCGCGCGG GCGTGGTGCC CAACGCGGCC 
TACCGCCATT TCGCGAGCCG GCGGGAGCTG CTGCTGGCGG TGCGCGCGGC CGCGCTGTCG 
GCGGCGGCCA GTGCGATGGA AAAGGAGCTG GCGGTGCTGC CCTGCGATCA GCCGCCCGTC 
GACTTCGCGC GGGCGCAGGT GCGGGCCATC GGCACCGGCT ACCTGCGCTT TGCCCAGGCC 
GAGCCGGGCC TGTTCCGCAC CGCTTTCGTG GTGTCATCGG AAGACGCCGA GGGCGAGGTG 
GGGCCGGGAA AGGAGGGCGC CAGCGGCAAG GATCCGTTCC AGCTGCTGGG CGCCGCGATC 
GACCGGCTCG TGGAAGCCGG TGCGCTCGAC CCTTCGCACC GCCCCAATGC CGAATACCTG 
GCCTGGTCGG CCGTGCACGG CCTGGCGCTG CTGATCATCG AAGGACCGCT CAAGGGCATG 
GATGCGCAAT CCAGCCACGC GCTGGGGCAG CGGCTGATCG ACATGGTGGA GCGGGGGCTT 
TAG
 
Protein sequence
MSPRIVPPAP NPPAARSTYR HGDLRRALLD AGIELARDGG PDAVALREVT RRAGVVPNAA 
YRHFASRREL LLAVRAAALS AAASAMEKEL AVLPCDQPPV DFARAQVRAI GTGYLRFAQA 
EPGLFRTAFV VSSEDAEGEV GPGKEGASGK DPFQLLGAAI DRLVEAGALD PSHRPNAEYL 
AWSAVHGLAL LIIEGPLKGM DAQSSHALGQ RLIDMVERGL