Gene Vapar_4407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4407 
Symbol 
ID7974081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4650512 
End bp4651003 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content69% 
IMG OID644794996 
Producttranscriptional regulator, MarR family 
Protein accessionYP_002946284 
Protein GI239817374 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.102927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCGTC CATCCAAGAA CAGTCCCGCC AAGGCAGAGC CGGCCGCAGC GCCAAACGGC 
AAATCGGAGC GGCTCGACGC CCGCATGCTG GAAGCCCTGG TCGGCTACAA CGCACGCCGC 
GCCTGGCTCA TCGTGAGCAG CGTGTTCGCC GACCGCATGG CGCCGTACGG CCTCAAGCAG 
ATCGACTTCT CGGTGCTGTC GCTGCTGGCG CACAACCCGG GCGCCACCTC GCGCCAGCTG 
TGCAACACGC TCGACATCCT GCCGCCCAAC CTGGTGAGCC TGGTCGCCAC GCTGGACAGC 
CGCGGACTCA TCGAGCGCCG CCCGCATCCG CACGATGGCC GCGCGGTGGG CCTGCACCTC 
ACCGAGGCCG GCGAAAAGCT GATTCGCGAG GCCGAGCAGA CCGTGACGCA GCTCGAGGCC 
GACGCCAGCG CCCGGCTCAC GGTGCGCGAG CGCGAAACGC TGATCCGGCT GCTGCAGAAG 
ATCTACCTCT AG
 
Protein sequence
MPRPSKNSPA KAEPAAAPNG KSERLDARML EALVGYNARR AWLIVSSVFA DRMAPYGLKQ 
IDFSVLSLLA HNPGATSRQL CNTLDILPPN LVSLVATLDS RGLIERRPHP HDGRAVGLHL 
TEAGEKLIRE AEQTVTQLEA DASARLTVRE RETLIRLLQK IYL