Gene Vapar_4400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4400 
Symbol 
ID7974074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4641372 
End bp4643222 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content69% 
IMG OID644794989 
Productpotassium efflux system protein 
Protein accessionYP_002946277 
Protein GI239817367 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0475] Kef-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.199549 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACACG CACCCGCCTG GCTGACCAAC AGCCTGATCT ACCTGGGCGC CGCCGTGCTG 
GTGGTGCCGC TGTCCAAGGC GCTGGGCCTG GGCTCCATCA TCGGCTACCT CGTGGCCGGC
ATCGCGATCG GCCCGTGGGG GCTCGGGCTC GTCTCCAGCG TGGAGGACGT GCTGCATTTC
GCCGAATTCG GCGTGGTGCT GATGCTGTTC CTCGTGGGCC TGGAGCTCGA ACCCAAGCGC
CTGTGGAACC TGCGCCGGCC GATCTTCGGC TGGGGCACCG CGCAGGTGCT GAGCTGCGCC
GCGGTGCTGT TTGCCGTCGG CTTTGCCGCG GGCGTGGCGT GGCGGGTGGC GCTGGTGGCG
GCGCTCGGCC TGGCGCTGTC TTCCACCGCC ATCGCGCTGC AGGTGCTGGG CGAACGCAAC
CTGCTGAAGA CCCCGAGCGG CCAGGCGGGC TTCTCGATCC TGCTGTTCCA GGACGTGGCA
GCCATTCCGA TCCTCGCGCT GCTGCCGCTC TTGGCCGGCG CCACGGCGGC CGAGCAGTCG
CTCAGCGGGC TGGACCGCAC GCTCGAGGGC CTGAAGATCG TCGGCGTGAT CGCCGGCATC
ATCCTCGGCG GCCGGTTGGC CCTGCGTCCG CTGCTGCGCT GGATCGCGCG CAGCAACACG
CCCGAGATCT TCACCGCCGC GGCGCTGCTC CTGGTGGTGG CCATCGCCGC GCTGATGCAG
TTCGTGGGCC TGTCGATGGC GCTGGGCGCC TTCCTTGCCG GCGTGCTGCT GGCCGAGAGC
GAATACCGGC GCGAGCTCGA GACCGACATC GAGCCCTTCA AGGGCCTGCT GCTGGGCCTG
TTCTTCATTG CCGTGGGCAT GTCGATCAAC TTCGGCGTGC TGATCGCGAG CCCGGGGCTG
ATGGCGCTGC TGGTGGTCGG CTTCATGGCC ATCAAGCTGG CCGTGATCTA CGCGCTGGCC
AAGGCCATGG GCCTGGCCTA CCAGGAGCGG CCGGTGTTCA CGCTGCTGCT GGCGCAGGGC
GGCGAGTTCG CGTTCGTGGT GTTCCAGGCC GCGGGCCCCG ACGTACTGCC GCCCGAGACC
ACCTCGCTCC TGATCGGCGC GGTGGCGCTG TCGATGCTGC TGTCGCCGCT CCTGCTGGTG
CTGCTCGACA AGTTCGTGCT GCCGCGCTAC AGCCGCAGCA ACGGCACGCA GCTGGAAGAA
ATTTCGGAGC AGCAGGACGC CAAGGTGCTG ATCTGCGGCT TCGGGCGCTA CGGCCAGATC
GTGGGCCGCA TGCTGATATC GCAGGGCCTG CGCGTGACGG TGCTCGACCA CGACGCCGAC
ACCGTGGAGG GCCTGCGCCA GTTCGGCTTT CGCGTGTTCT ACGGCGACGC GACGCGGCTG
GACCTGCTGC GCACCGCGGG CGCCGGCACG GCCAAGGCCA TCGTGGTGGC GGTGGACGAC
ATCGAGCAGT CGCTGGAGAT CGTCGATCTC GTGAAGGAGC ACTTTCCGAA GGCCCGCATC
ATCGCGCGGG CGCGCAACGT GAACCACCTG TTCCAGCTGC GCGACCGCGG CGTGACGGAC
GTGGAGCGCG AAGTGTTCGA GTCGTCACTG CGCAGCGCGC GCACCGCGCT CGAGGCGCTG
GGCTGGCCGG CGCACGAGGC GCGCGAATCG GCCATGCGCT TTCGCCGCCG GAACCTCAAG
CTCAGCGACG AGATGTACCC GCACTACAAG GACCGCGCCC AGCTGATCGC GGCCAGCAAG
GCCGGCCGCC AGCAGTTCGA GGAACAGATG GCGCGCGAAC GCGAGGAACG GCAGCGCCGC
TCGGGCCTCG ACTGGGACCT GATCGAGGAA AAGGAAGAGG CGGACGCGTA G
 
Protein sequence
MEHAPAWLTN SLIYLGAAVL VVPLSKALGL GSIIGYLVAG IAIGPWGLGL VSSVEDVLHF 
AEFGVVLMLF LVGLELEPKR LWNLRRPIFG WGTAQVLSCA AVLFAVGFAA GVAWRVALVA
ALGLALSSTA IALQVLGERN LLKTPSGQAG FSILLFQDVA AIPILALLPL LAGATAAEQS
LSGLDRTLEG LKIVGVIAGI ILGGRLALRP LLRWIARSNT PEIFTAAALL LVVAIAALMQ
FVGLSMALGA FLAGVLLAES EYRRELETDI EPFKGLLLGL FFIAVGMSIN FGVLIASPGL
MALLVVGFMA IKLAVIYALA KAMGLAYQER PVFTLLLAQG GEFAFVVFQA AGPDVLPPET
TSLLIGAVAL SMLLSPLLLV LLDKFVLPRY SRSNGTQLEE ISEQQDAKVL ICGFGRYGQI
VGRMLISQGL RVTVLDHDAD TVEGLRQFGF RVFYGDATRL DLLRTAGAGT AKAIVVAVDD
IEQSLEIVDL VKEHFPKARI IARARNVNHL FQLRDRGVTD VEREVFESSL RSARTALEAL
GWPAHEARES AMRFRRRNLK LSDEMYPHYK DRAQLIAASK AGRQQFEEQM AREREERQRR
SGLDWDLIEE KEEADA