| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4396 |
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| Symbol | |
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| ID | 7974070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4638967 |
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| End bp | 4639428 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794985 |
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| Product | RNA methyltransferase, TrmH family, group 2 |
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| Protein accession | YP_002946273 |
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| Protein GI | 239817363 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
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| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.198314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCATA TCGTCCTGGT CCAGCCCGAA ATCCCGCCGA ACACGGGCAA CGTGATCCGC
CTTGCCGCCA ACACCGGCTG CACGCTCCAC CTGGTCGAGC CGCTGGGTTT CTCGATGGAC
GACCGCCTGC TGCGCCGCGC CGGGCTCGAC TATCATGAAT ACGCCGAAGT GAAGCGCCAC
GCCGGCTGGC AGGCGCTGCT CGAGGCCGAG CGGCCAGCCG CCGAGCGCAT GTTCGCGCTC
ACCACGCGCG GCACGCGGGC CGTGCACGAC GTGCGCTTCC AGCCGGGCGA CTGGCTGGTG
TTCGGCTCGG AGACCAGCGG CCTGCCGCCT GCGGTGCGCG AGGGCTTTGC CGAACCGCAG
CGCCTGCGGC TGCCGATGCG CGAAGGACAG CGCAGCCTGA ATCTGTCGAA TGCCGTGGCG
GTGACCGTCT TCGAGGCCTG GCGCCAGAAC GGCTTCGGCT GA
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| Protein sequence | MFHIVLVQPE IPPNTGNVIR LAANTGCTLH LVEPLGFSMD DRLLRRAGLD YHEYAEVKRH
AGWQALLEAE RPAAERMFAL TTRGTRAVHD VRFQPGDWLV FGSETSGLPP AVREGFAEPQ
RLRLPMREGQ RSLNLSNAVA VTVFEAWRQN GFG
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