Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4391 |
Symbol | |
ID | 7974065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4633732 |
End bp | 4635363 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644794980 |
Product | cytochrome c oxidase, subunit I |
Protein accession | YP_002946268 |
Protein GI | 239817358 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCAG TCCTCGACCC CCACGGTCAC GCCCACGACG GCCACGCACA CGACGAGCAC CACGCAGCGC CCACCGGCTG GCGCCGCTGG GTGTTCGCCA CCAACCACAA GGACATCGGC ACGCTCTACC TGCTGTTCAG CTTCACCATG CTGATGGTGG GCGGCGTGCT TGCGCTCCTG ATCCGCGCCG AGCTGTTCCA GCCCGGCCTG CAGCTGGTGA ACCCCGAGCT GTTCAACCAG TTCACCACCA TGCACGGCCT GATCATGGTG TTCGGCGCCA TCATGCCGGC CTTCGTCGGC TTCGCGAACT GGATGATCCC GCTGCAGATC GGCGCATCCG ACATGGCGTT CGCGCGCATG AACAACTTCA GCTTCTGGCT GCTGATCCCC GCCGCGCTGA TGCTCGTGGG CTCGTTCTTC ATGCCCGGCG GCGCGCCCGC CGCGGGCTGG ACGCTCTACG CGCCGCTCAC GCTGCAGATG GGCCCCTCGA TGGACGCCGG CATCTTCGCG ATGCACATCA TGGGCGCCTC GTCGATCATG GGCTCGATCA ACATCATCGT CACCATCCTG AACATGCGCG CCCCCGGCAT GACGCTCATG AAGATGCCGA TGTTCTGCTG GACCTGGCTC ATCACCGCCT ACCTGCTGAT CGCCGTGATG CCCGTGCTCG CAGGCGCCAT CACCATGACG CTGACCGACC GCCACTTCGG CACCAGCTTC TTCAACCCCG CCGGCGGCGG CGACCCGGTG ATGTACCAGC ACATCTTCTG GTTCTTCGGC CACCCCGAGG TCTACATCAT GATCTTGCCG GCCTTCGGCA TCATCAGCCA GATCGTGCCG GCGTTCTCGC GCAAGCGGCT GTTCGGCTAC GCCTCGATGG TGTACGCCAC CTCGTCGATC GCGATCCTGT CGTTCATCGT CTGGGCGCAC CACATGTTCA CGACCGGCAT GCCGGTCACG GGCCAGCTGT TCTTCATGTA CGCGACCATG CTGATCGCGG TGCCCACGGC CGTGAAGATC TTCAACTGGA TCGCCACCAT GTGGCAGGGC TCGATGACCT TCGAGACCCC GATGCTGTTC GCGGTGGGCT TCATCTTCGT GTTCACGATG GGCGGCTTCA CCGGCCTCAT CCTGGCCATC GCCCCGATCG ACATCCAGCT GCAGGACACC TACTACGTGG TGGCCCACTT CCACTACGTG CTGGTGGCCG GCTCGCTCTA TGCCATGTTC GCGGGCTACT ACTACTGGGC GCCCAAGTGG ACCGGCGTGA TGTACAACGA AACGCGCGGC AAGATCCACT TCTGGTGGTC GCTGATCTCG TTCAACGTCA CCTTCTTCCC GATGCACTTC CTCGGCCTCG CGGGCATGCC GCGCCGCTAT GCCGACTACC CGATGCAGTT TGCCGACTTC AACGCGGTGG CTTCGGTGGG TGCGTTCGCC TTCGGTCTGG CCCAGGTGTA CTTCTTCTTC TTCATCGTGC TGCCGACCAT GCTCGGCAAG GGCGAGAAGG CAGCGCAGAA GCCCTGGGAA GCGGCTGAAG GCCTCGAGTG GGAAGTGCCG TCGCCGGCGC CCTTCCACAC CTTCGAGAAC CCGCCCAAGC TCGATGCGAC CGCCACCAAG GTGATCGGCT GA
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Protein sequence | MSAVLDPHGH AHDGHAHDEH HAAPTGWRRW VFATNHKDIG TLYLLFSFTM LMVGGVLALL IRAELFQPGL QLVNPELFNQ FTTMHGLIMV FGAIMPAFVG FANWMIPLQI GASDMAFARM NNFSFWLLIP AALMLVGSFF MPGGAPAAGW TLYAPLTLQM GPSMDAGIFA MHIMGASSIM GSINIIVTIL NMRAPGMTLM KMPMFCWTWL ITAYLLIAVM PVLAGAITMT LTDRHFGTSF FNPAGGGDPV MYQHIFWFFG HPEVYIMILP AFGIISQIVP AFSRKRLFGY ASMVYATSSI AILSFIVWAH HMFTTGMPVT GQLFFMYATM LIAVPTAVKI FNWIATMWQG SMTFETPMLF AVGFIFVFTM GGFTGLILAI APIDIQLQDT YYVVAHFHYV LVAGSLYAMF AGYYYWAPKW TGVMYNETRG KIHFWWSLIS FNVTFFPMHF LGLAGMPRRY ADYPMQFADF NAVASVGAFA FGLAQVYFFF FIVLPTMLGK GEKAAQKPWE AAEGLEWEVP SPAPFHTFEN PPKLDATATK VIG
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