Gene Vapar_4389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4389 
Symbol 
ID7974063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4632929 
End bp4633555 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID644794978 
Productcytochrome C oxidase assembly protein 
Protein accessionYP_002946266 
Protein GI239817356 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3175] Cytochrome oxidase assembly factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTCG GTCAACGCAT CAAGCGCGCC AATGTCCGCA TGGTCGGCAA GCTGGCCGTG 
GTGGCCTGCG GCATGTTCGC GTTCGGCTAT GCCCTGGTGC CGCTGTACCG CGCCATCTGC 
GAAATGACCG GCATCAACAT CCTTGCGCTC AGCGAACTCG AGGTGCCGGG CGGCGCGAGC 
GGCGGCAAGA ACGTGCGCGT GCCCGACAAC ACGCAGGTCG ACACCACGCG CACCATCACG 
GTCGAGTTCG ACTCCAACGT GCGCGGTGCC CTCTGGGACT TCAAGCCCGC CGAGCGGACG 
ATTCAGGTGC ACCCCGGCCA GCTCAACACC GTGGTCTACG AATTCCAGAA CGTGCAGAAC 
CGCCGCATGG CGGCGCAGGC CATCCCGAGC TATGCGCCGC AGCAGGCCGC GCCGTACTTC 
AACAAGCTCG AGTGCTTCTG CTTCAACCAG TACACGCTCG ACCCGGGCGA GAAGAAGCAG 
TGGCCCGTCG CCTTCGTGAT CGACCCGAAG ATCTCCAAGG ACGTGAAGAC CATCACGCTG 
TCCTACACCT TCTTCGAAGT CGGCGGCAGG ACGCCCGCGG CCCCGGTGGC CGCTGTTTCG 
AATGCTGCCC ATGAGCCCCG TTCGTGA
 
Protein sequence
MSLGQRIKRA NVRMVGKLAV VACGMFAFGY ALVPLYRAIC EMTGINILAL SELEVPGGAS 
GGKNVRVPDN TQVDTTRTIT VEFDSNVRGA LWDFKPAERT IQVHPGQLNT VVYEFQNVQN 
RRMAAQAIPS YAPQQAAPYF NKLECFCFNQ YTLDPGEKKQ WPVAFVIDPK ISKDVKTITL 
SYTFFEVGGR TPAAPVAAVS NAAHEPRS