| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4361 |
|---|
| Symbol | |
|---|
| ID | 7970552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4607610 |
|---|
| End bp | 4609205 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794950 |
|---|
| Product | N-acyl-D-amino-acid deacylase |
|---|
| Protein accession | YP_002946238 |
|---|
| Protein GI | 239817328 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3653] N-acyl-D-aspartate/D-glutamate deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.500767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAC CAGTTGTCGT GCTCGCCATC TCCGCGGCCT TGGCAGGCCT CTCGTCCGCA
GCCCCCGCCA CGACCGATGC CCCCGTCGAA CTCGACCTGC TGCTGCGCGG CGGCACCGTC
TACACGGGCG ATTCGGACCA GCCCGTGGTG GGCGACGTCG GCATCGTGGG CGACCGCATC
GTCTTCGCGG GCCGGAAGGC GCCGCCGCAG TTCAGCGCGC GGCGAACCAT CGACGCGGCC
GGCCTCGTCG TGGCACCAGG CTTCATCGAC GCCCACACCC ACGCCGATGC CGACCTGCAT
TCCACCGATC CGCGCAAGCG CCTGAACATT CCCTTTCTCA CGCAGGGCGT GACCACCGCG
GTCATCGGCA ACGACGGCTT CGGCGGCTTC GACATTGCCG CACAGACGCA GCGCCTGCGA
TCGGCGCCCG TTGGAACCAA CGTCGCCATG TACGTGGGCT TCGGCCCCGT GCGCATCGAC
CAGCTCGGCG AAGCCAATCG CACGCCGACG CCCGAGCAGC TCGACGCCAT GCGCCGGCAC
CTGAGCCGCG CCATCTGCGA CGGCGCGCTG GGGCTTTCGA CCGGGCTTTT CTATCCGCCG
CAGAATTTCT CGAAGACCGA GGAAGTGATC GAGCTCGCGA AGGTCGCGGC CGGCCACGGC
GGGCTCTACG ACAGCCACAT CCGCGACGAG TCGATGTACA ACATCGGGCT CAAGGGTTCC
ATCGAGGAAG TGATCCGCAT CGGCCGCGAA GCCCGCCTGC CGGTGCATGT GGCGCACATC
AAGGCACTGG GCGTGGACGT ACAGGGCCAG AGCGGCGACA TCATCCGCCG CATCGAGAAG
GAGCGTGCCG CCGGCCTCGA CATCACGGCC GACCACTACC CGTGGACGGC ATCGAGCACG
CGTTTCTCGG CCGCGCTCGT GCCGCTCTGG GCGGTCGACG GCGGGCGCGC GGCGATGCTC
AAGCGCTTCG ACGACCCGGC CGTGCAGGAG CGCCTGCGCA CCGGCATGCG CGAGAACCTG
CGCCTGCGCG GCGGTCCGGA GACCATCCTG TTTTCGGCCG GCAGCACCAA GTACGTGGGC
AAGACGCTGG CCGACGTGGC CAAGGCCTCG GGTGCCGACC CGGTGGATGC CGCCATCGCC
GTGCTGCGGG ACGGCGACCT GATGATCGCC TCCTTCAACC AGAGCGACGA CGACGTGCGC
GCGTTCATGA AGCGGCCATG GGTCATGACC TCCTCCGATT CCTCGCTGGG CCATCCGCGC
GCCTACGGCA CCTTCGCGCG CAAGTACGAC CAGTACGTGG TGAAGGAGCA CACGATCTCG
CTGGGCCAGT TCATCCGCAG CAGCTCGTCG CTGACCGCGG ACACGCTGGG GCTGGAACAG
CGCGGGCACC TGCGGCCGGG CTACTACGCC GACGTGGTCG TGTTCGACCC CGCGCGCTAT
GCCGCCAAGG CCACCTACAC GCAGCCGACG CTGCTGTCGG AGGGCGTGGT CACGGTGGTG
GTGAACGGCC GCCTCGCGGT GGATGCCGGC AAGCCCACGG GCGTGGGCGC GGGCCAGCCG
CTGCTGCGCA CGCCGAAGAC CGGCAGCTGC ACCTGA
|
|---|
| Protein sequence | MQKPVVVLAI SAALAGLSSA APATTDAPVE LDLLLRGGTV YTGDSDQPVV GDVGIVGDRI
VFAGRKAPPQ FSARRTIDAA GLVVAPGFID AHTHADADLH STDPRKRLNI PFLTQGVTTA
VIGNDGFGGF DIAAQTQRLR SAPVGTNVAM YVGFGPVRID QLGEANRTPT PEQLDAMRRH
LSRAICDGAL GLSTGLFYPP QNFSKTEEVI ELAKVAAGHG GLYDSHIRDE SMYNIGLKGS
IEEVIRIGRE ARLPVHVAHI KALGVDVQGQ SGDIIRRIEK ERAAGLDITA DHYPWTASST
RFSAALVPLW AVDGGRAAML KRFDDPAVQE RLRTGMRENL RLRGGPETIL FSAGSTKYVG
KTLADVAKAS GADPVDAAIA VLRDGDLMIA SFNQSDDDVR AFMKRPWVMT SSDSSLGHPR
AYGTFARKYD QYVVKEHTIS LGQFIRSSSS LTADTLGLEQ RGHLRPGYYA DVVVFDPARY
AAKATYTQPT LLSEGVVTVV VNGRLAVDAG KPTGVGAGQP LLRTPKTGSC T
|
|---|
| |