| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4358 |
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| Symbol | |
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| ID | 7970549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4604733 |
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| End bp | 4605602 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794947 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002946235 |
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| Protein GI | 239817325 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.261709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACCT TCGACCTGGA ACAGCTTCGC ACCCTGGCCG CGGTGATCGA TGCCGGCAGC
CTCACGGCCG CGGCGCCGCG CGTGTTTTTG TCGCAGTCGT CGGTCAGCGA GCAGATCCGC
AAGCTCGAGG AGCGGGCAGG GCAGTCGCTG CTCACGCGCA GCAAGGCCGG CGTGGCGCCG
ACCGAGGCCG GCACGCGGCT CCTGGCCTAT GCGCGCCGCA TTCTCGCGCT CAGCGACGAG
GCGTTCCGCG ATCTGCATGG CGAGACGCTG CAGGGCGAAC TGCGGCTCGC CGTGACCGAC
TACTTTCGAC CCGGCGATCT CACGCGGCTG CTGGGGCGTC TTGGCGAGAG CTATCCGCAG
GTGCGGCTGC ACGTGAGCAT CATGAAGAGC GACGCGCTGC GGGCCGCCTA TGCGCACGGC
GATTTCGACG TGGGGCTCGC GATGAACATC GCCGGGAGAT CGCCGTCGCC CGAGCCGGGC
GCAAAGGCTC CGGTGATCCG GCGCGAATCG CTCGCGTGGC TCGGCGCGGC CGGCATGCGG
CTCGCACGCG GCGAGCCGGT GCGGCTGCTG GCCTTGCCGG ACACCTGCTC GTTGCACCAG
TACACGGTGG CGCTGTTGCG GCGGCGGCGC GTGCCGTATG TGCTGGCGCA CGTGGCGTCG
GGCGTGGCGG GATTGCAGTC GGCGCTGGCT GCGGGGCTGG GGGTGGCCTG CCTGAACGAA
TCGGCGGTGT GCGAAGGGGT CGCCCGGCTG GCAGCGCCGC ATGGCCTGCC GGCGCTGCCC
CGGGTCGCGT TCCAGTTCCT GCCCGCGCGC CGCGGAGAGA CCGAATTCGT GACGCGGGCG
CGGGAGATGC TGGCCACCCA CCTGGTCTGA
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| Protein sequence | MQTFDLEQLR TLAAVIDAGS LTAAAPRVFL SQSSVSEQIR KLEERAGQSL LTRSKAGVAP
TEAGTRLLAY ARRILALSDE AFRDLHGETL QGELRLAVTD YFRPGDLTRL LGRLGESYPQ
VRLHVSIMKS DALRAAYAHG DFDVGLAMNI AGRSPSPEPG AKAPVIRRES LAWLGAAGMR
LARGEPVRLL ALPDTCSLHQ YTVALLRRRR VPYVLAHVAS GVAGLQSALA AGLGVACLNE
SAVCEGVARL AAPHGLPALP RVAFQFLPAR RGETEFVTRA REMLATHLV
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