Gene Vapar_4356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4356 
Symbol 
ID7970547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4602352 
End bp4603770 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content71% 
IMG OID644794945 
Productamidase 
Protein accessionYP_002946233 
Protein GI239817323 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0637971 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGCCG ACGTGTCATC TTCTTCTTCG CTGAACGAGC TTTCCGCCCA GGAACTCTCC 
GCCGCCTACC GCGACAGGCG CCTGTCGCCT GTCGAAGTCA CGCAAGCCGT CATCGCGCAG
ATCGAGCGCT GCGAGCCCAA GCTGCAGGCC ACCTGGCTCT TCAGGCCCGA AGCCGCGCTG
GAACAGGCGC GCGCTTCGGA AGCACGCTGG CAGCGCGGCG ACGCGCTCGG CCCGCTCGAC
GGCGTGCCGG CCACCATCAA GGAGAACATC GCGACCCGCG GCGATCCGAT GCCGGCCGGC
ACGGCCGCCG TCGACCTGAA GCCCGCGGCC GCCGATGCAC CGCCCGCCGC GCGCCTGAAG
GAAGCCGGCG CGGTGATCGT GAGCAAGACC ACCATGCCGG ACTACGGCAT GCTGTCTTCG
GGGCTCTCGA GCTTTCACAC GCTGGCGCGC AACCCCTGGG ACCTGAGCCG GACCCCCGGC
GGCTCGAGCG CGGGCGCGGG TGCGGCGGCC GCCGCGGGCT ACGGCCCGCT GCACATCGGC
ACCGACATCG GCGGGTCGCT GCGGCTGCCC GCGAGCTGGT GCGGCATCTT CACGCTCAAG
CCGAGCCTGG GCCGCATCCC GATCGACCCG CCCTACATGG GCCGCGCGGC CGGCCCGATG
ACGCGCAGCG TGGGCGATGC GGCGCTGATG ATGCAGGTGC TTTCAAAGCC CGATGCGCGC
GACAGCATGA GCCTGCCGCC GCAGGACATC GCGTGGGAGA GCTTCGACGT ATCGCCCGAC
CATCTGCGCG GCTTGCGCAT CGGCCTGCTG CTGGACGCGG GTTGCGGCCT CGCGGTCGAG
CCCGAGATCC AGGCGGCGGT CGAGCATGCA GCGCGCCTGT TCGAAAAGGC CGGCGCCATC
GTCGAACCCA TGCAGCCGTT CATGTCGCAA GCCATGCTCG ACGGCATGGA CCACCTGTGG
CGCATGCGAT CGCTGGTGGA CATGAAGGCG CTGCGCCCCG ACCAGCGCGC CAAGGTGCTG
CCCTACATCC GCGAGTGGGC CGAGAGCGCG GCCGAGTTCA GCGGCGAGCA TGTGTTCCGC
GGCTTCAGCC AGTTCCATGC AACGCGCGTG GCCACGGTGC AGGCCTGCGC GCGCTTCGAC
TACGTGATCT CGCCGGTGTC GCCGAACATG CCGGCGGCCG CGGAGGCGCC GTCCCCGACC
AACGATCCGC TGCGGCCGCT GGAGCACATC GGATTCACGG TGCCGTTCAA CATGTCGGAG
CAGCCGGCGT CGTCGGTGAA CTGCGGGTAC TCGGCGAGCG GGCTGCCGAT CGGGCTGCAG
ATCGCCGGGC AGCGCTTCGA CGACCTCGGC GTGCTGCGCG TGTCGCGTGC GTTCGAGCAG
ATTCGGGAGC CGCAGCGGCC CTGGCCTGTG ACGCCTTGA
 
Protein sequence
MSADVSSSSS LNELSAQELS AAYRDRRLSP VEVTQAVIAQ IERCEPKLQA TWLFRPEAAL 
EQARASEARW QRGDALGPLD GVPATIKENI ATRGDPMPAG TAAVDLKPAA ADAPPAARLK
EAGAVIVSKT TMPDYGMLSS GLSSFHTLAR NPWDLSRTPG GSSAGAGAAA AAGYGPLHIG
TDIGGSLRLP ASWCGIFTLK PSLGRIPIDP PYMGRAAGPM TRSVGDAALM MQVLSKPDAR
DSMSLPPQDI AWESFDVSPD HLRGLRIGLL LDAGCGLAVE PEIQAAVEHA ARLFEKAGAI
VEPMQPFMSQ AMLDGMDHLW RMRSLVDMKA LRPDQRAKVL PYIREWAESA AEFSGEHVFR
GFSQFHATRV ATVQACARFD YVISPVSPNM PAAAEAPSPT NDPLRPLEHI GFTVPFNMSE
QPASSVNCGY SASGLPIGLQ IAGQRFDDLG VLRVSRAFEQ IREPQRPWPV TP