| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4355 |
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| Symbol | |
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| ID | 7970546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4600868 |
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| End bp | 4602355 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794944 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002946232 |
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| Protein GI | 239817322 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0355555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAACC GTCGCACCCT CCTTGCCACC GCCGGCGCCA CCGTGGCGCT GGCCTCTCCC
ATCGCCGGCA TGGCGCAGGG GCGGAAGGAC GCCATCGTGA TCGGCATGGC GCTCGAGCCG
CCGGGCCTGG ACCCGACCGC CGGCGCCGCG GCCGCCATCG CGGAAGTGGT GCACTACAAC
ATCCTGGAGA CGCTCACCAA GATCAACGCC GACGGCAGCG TCACGCCGCT CCTGGCCGAG
AGCTGGGAAA TCTCGCCCGA CCTGAAGACC TACACCTTCA AGCTGCGGCG CGGCGTCAAG
TACCAGAACG GCGAGCCCTT CAATGCCGCC GCGGTGAAAT TCTCCTTCGA CCGCGCCGGC
GGCGAGAAGA GCACCAACAA GGACAAGCGC ACCTTCGCGA ACCTGAGCAC GCAGGTGGTC
GACGACTACA CCGTGGTGGT CATCAACAAG GAAATCGACC CCGACCTGCC CTTCGTGCTG
GGCCAGGCCA CGGCCGTGAT CGTCGAGCCC AAGAGCGCCG ACGGCAACGC CACCAAGCCG
GTCGGCACCG GCCCCTACAA GCTCGACAAC TGGGCCAAGG GCTCGTCGAT CACGCTGAGC
AAGTGGGAGG GCTTCCGCAG CCCGGCCACG GCCAGGATCA ACAAGGTCAC CTTCCGCTTC
ATTTCCGACA CGGCCGCGCA GGCCGCCGCG CTGATGGCCG GCGACGTCGA CGTGTTCACG
CGCATCGGCA CGCGCGCGGT GCCGCAGTTC AAGATGAACC CGCAGTTCCA GGTGATCCTG
GCCGGCTCGC GCGCCAAGAC CATTCTGTCG ATCAACAACA AGAAGAAGCC GCTGGACGAC
GTGCGCGTGC GCCGCGCCAT CCTGGCGGCC ATCGACCGCA AGGCCGTGAT CGAAGGCGCG
GCCGACGGCT TCGGCGTGCC GATCGGCAGC CACTACGTGC CGGGCGCCGC AGGCTATGTC
GACACCACGG GCATCAACCC CTTCGACCTC GAGAAGGCCA AGAAGCTGAT GGCCGAGGCC
GGCGTGAAGA CGCCGCTCGA ACTCACCATG ACGCTGCCGC CGCCGCCCTA CGCACGCCAG
GGCGGCGAGG TGATCGTGGC GCAGCTCGCC AAGATCGGCA TCACGGTCAA GGTGCAGAAC
GTGGAGTGGG CGCAGTGGCT CAGCGGCACC TACGGCAACA AGGACTACGA CCTGTCGATC
GTCTCGCACG TCGAGCCCTT CGACCTCGGC AACTACGCCA AGCCCGACTA CTACTGGGGC
TACCAGTCGA AGGCCTTCAA CGCGCTGTTC GACAAGATCA AGGCGACGGC CAATGCGGCC
GAGCGCAACA AGCTGCTCGG CGAAGCGCAG AAGATGCTGG CGGTCGATGC GGCCAACGGC
TTCCTCTACC AGCCGCAGTT CCCCACCATC GCGAAGAAGA ACGTGAAGGG CCTCTGGAAG
GAGAACCCGA TCTTCGTGAA CGACCTCTCG GCGCTGTCAT GGGGATGA
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| Protein sequence | MLNRRTLLAT AGATVALASP IAGMAQGRKD AIVIGMALEP PGLDPTAGAA AAIAEVVHYN
ILETLTKINA DGSVTPLLAE SWEISPDLKT YTFKLRRGVK YQNGEPFNAA AVKFSFDRAG
GEKSTNKDKR TFANLSTQVV DDYTVVVINK EIDPDLPFVL GQATAVIVEP KSADGNATKP
VGTGPYKLDN WAKGSSITLS KWEGFRSPAT ARINKVTFRF ISDTAAQAAA LMAGDVDVFT
RIGTRAVPQF KMNPQFQVIL AGSRAKTILS INNKKKPLDD VRVRRAILAA IDRKAVIEGA
ADGFGVPIGS HYVPGAAGYV DTTGINPFDL EKAKKLMAEA GVKTPLELTM TLPPPPYARQ
GGEVIVAQLA KIGITVKVQN VEWAQWLSGT YGNKDYDLSI VSHVEPFDLG NYAKPDYYWG
YQSKAFNALF DKIKATANAA ERNKLLGEAQ KMLAVDAANG FLYQPQFPTI AKKNVKGLWK
ENPIFVNDLS ALSWG
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