| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4351 |
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| Symbol | |
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| ID | 7970542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4596363 |
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| End bp | 4597238 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794940 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002946228 |
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| Protein GI | 239817318 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCA CCACCATTCC GAGCGCAGCG GCGCTCAAGG TGCCGGGCTT CTGGCGCCGC
GCGCTCCGGC ACCGCAGCTT CGTGCTCGGC GGCGTGCTGA CGCTGCTCCT GCTGCTGGCC
GCCGCCCTCT CGCTGGTGTG GACGCCCTGG TCGCCCTACG AGATGGACAT GGCCAGCAAG
CTCAAGCCGC CCTCGGGCGC GCACTGGCTG GGCACCGATA CCTTCGGGCG CGACGTGGCC
TCGCTGCTGC TGGTGGGGGC GCGCGCCTCC ATCCTGGTGG GCGTGATCGC GGTGGGCATC
GGGCTTGTCG TGGGCACCGC GCTGGGCCTG CTTGCCGCCG CGCGGCGCGG CTGGGTCGAG
GAAGCCATCA TGCGGCTCAC CGATTTCTCG CTCGCGTTTC CGGCCATCCT GTCGGCCATC
ATGATGACGG CGGTGTTCGG CGCCGGCATC GTCAACGCGA TCATCGCGAT CGGCATCTAC
AACATCCCGA CCTTTGCGCG CATCACGCGC GCCTCGGCCA ACGCCATCTG GTCGCGCGAA
TACGTGGCCG CCGCGCGGGC CTGCGGCAAG GGTTCGTTCG CCATCACGAT GCAGCACGTG
CTGCCCAACA TCTCGGCCGT GCTGATCGTG CAGATCACGA TCCGCTTCGC CATTGCCATC
CTGGCCGAGG CCGCCCTTTC CTACCTTGGC CTGGGCACGC AGCCGCCGCA GCCCTCGTGG
GGCCGCATGC TGAGCGAGGC GCAGACCATG ATGTTCCAGT CGCCGCTGCT CGCGGTGTTT
CCGGGCATGG CCATTGCCAT GGCGGTGCTC GGCCTCAACC TGCTCGGCGA CGGGCTGCGC
GACCTGCTCG ACCCGCGCCT TGCGCGCGCC CGCTAA
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| Protein sequence | MSTTTIPSAA ALKVPGFWRR ALRHRSFVLG GVLTLLLLLA AALSLVWTPW SPYEMDMASK
LKPPSGAHWL GTDTFGRDVA SLLLVGARAS ILVGVIAVGI GLVVGTALGL LAAARRGWVE
EAIMRLTDFS LAFPAILSAI MMTAVFGAGI VNAIIAIGIY NIPTFARITR ASANAIWSRE
YVAAARACGK GSFAITMQHV LPNISAVLIV QITIRFAIAI LAEAALSYLG LGTQPPQPSW
GRMLSEAQTM MFQSPLLAVF PGMAIAMAVL GLNLLGDGLR DLLDPRLARA R
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