Gene Vapar_4347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4347 
Symbol 
ID7970538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4593892 
End bp4594524 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content68% 
IMG OID644794936 
Productpeptidyl-tRNA hydrolase 
Protein accessionYP_002946224 
Protein GI239817314 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0193] Peptidyl-tRNA hydrolase 
TIGRFAM ID[TIGR00447] peptidyl-tRNA hydrolase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAAGC TGTTTGTCGG CCTCGGGAAT CCGGGGCCTG AATACGAAGC CACCCGGCAC 
AACGCCGGCT TCTGGTGGAT CGACGCCCTG GCGCGCGACT GGAAGCTCAA TCTCGTGCCC 
GAGCGCAGCT ACCACGGCCT TGCGGCACGC ACGAACATCG GCGGGCAGAG CGTCTGGCTG 
CTGGAGCCGC AGACCTTCAT GAACCTGTCG GGCAAATCGG TGGGCGCGCT CGCGCGCTTC 
TTCAAGATCG CACCCGAGGA AATCCTCGTG GTGCACGACG AGCTCGACGT GGTGCCCGGC 
CAGGCCAAGC TCAAGTTCGG CGGCAGCCAC GCGGGCCACA ACGGCCTGCG CGACATCCAT 
GCGCAGCTGG GCACCGGCGA CTACTGGCGC CTGCGCCTGG GCATCGGACA CCCCGGCGTG 
AAGTCGGAGG TCATCAACTG GGTGCTCAAG AAGCCGCTCA AGGAGCAGCG CGAAGCCATC 
GAGGACGCCA TCGTGCGCAC GCTGCACGCG GCGCCCGCGC TGGTGGCGGG CGAAATGGAA 
AAAGCCACCC TGATCATCCA CACGAGCAAA CCGCCCCGGC CCAAACCGCC GCGGCGGGAG 
CCCGGCGACG GAGGCACGCC CGCCACCGCC TAG
 
Protein sequence
MIKLFVGLGN PGPEYEATRH NAGFWWIDAL ARDWKLNLVP ERSYHGLAAR TNIGGQSVWL 
LEPQTFMNLS GKSVGALARF FKIAPEEILV VHDELDVVPG QAKLKFGGSH AGHNGLRDIH 
AQLGTGDYWR LRLGIGHPGV KSEVINWVLK KPLKEQREAI EDAIVRTLHA APALVAGEME 
KATLIIHTSK PPRPKPPRRE PGDGGTPATA