| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4346 |
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| Symbol | |
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| ID | 7970537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4593144 |
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| End bp | 4593818 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794935 |
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| Product | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 |
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| Protein accession | YP_002946223 |
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| Protein GI | 239817313 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1825] Ribosomal protein L25 (general stress protein Ctc) |
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| TIGRFAM ID | [TIGR00731] ribosomal protein L25, Ctc-form |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTCG TCGCTTTTGA GCGCGCCAAG CAGGGCACGG GTGCGAGCCG CCGTCTCCGC
ATCTCGGGCA AGACGCCCGG TATCGTCTAT GGTGGTGAAG GCAAGCCCCA GTTGATCGAG
CTCGATCACA ACGCGCTGTG GCACGCCCTC AAAAAGGAAG CCTTCCACTC GTCGATCCTC
GAAATGGAAC TCGGCGGCGC CACCAGCAAG GTGCTGCTGC GCGACGTGCA GTACCACCCG
TTCCGCCAGC TGGTGCAGCA CATCGACTTC CAGCGCGTGG ACGCCAAGAC CCGCATGCAC
ATGAAGGTGC CGCTTCACTA CAAGGGTGAA GAAGAGTCCG ACGCCGTCAA GCTCGACCAC
AACCTCGTGA CGCACGTCAT GACCGAACTC GAAGTGAGCT GCCTGCCGGC CGACCTCCCC
GAGTTCATCG AAGTGGACCT CTCGGGCCTC AAGAAGAACG CCACGCTGCA CGTCAACGAC
ATCAAGCTGC CCAAGGGCGT GAAGTTCGTG AGCCACGGCA AGCTGAACCC GGTCATCGTG
TCGGCCGTGC CGCCGCTGGT CTCCGAAGAG CCGGCACCCG CCGCCGAGGG CGCAGCACCT
GCCGAAGGCG CAGCAGCAGC AGCAGCCGGT GGCAAGCCTG CCGCCAAGAC GGCAAAGCCC
GCCGCGAAGA AGTAA
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| Protein sequence | MKFVAFERAK QGTGASRRLR ISGKTPGIVY GGEGKPQLIE LDHNALWHAL KKEAFHSSIL
EMELGGATSK VLLRDVQYHP FRQLVQHIDF QRVDAKTRMH MKVPLHYKGE EESDAVKLDH
NLVTHVMTEL EVSCLPADLP EFIEVDLSGL KKNATLHVND IKLPKGVKFV SHGKLNPVIV
SAVPPLVSEE PAPAAEGAAP AEGAAAAAAG GKPAAKTAKP AAKK
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