| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4342 |
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| Symbol | |
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| ID | 7970532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4588535 |
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| End bp | 4590385 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794930 |
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| Product | Tetratricopeptide domain protein |
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| Protein accession | YP_002946219 |
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| Protein GI | 239817309 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG3071] Uncharacterized enzyme of heme biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.118826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAT CGCTCCGCCG ACACCGCCTT GCGGCGGCCG CGTCCTTCGT CGTGTTGCTG
GCTTGCGCCG CGCATGCGCA AAGCTCCGAT CCCGCCGCGC CCAGGAGCCC GGCACCCATC
ATCGAACGGC CGGCACCCTC CCGCCCCGGC ACCAAGCCGG CGCCGGCCGC TGCCGCAGCC
GCCGCGAAGC CGGCCGGCGA CCCCGAGGCC CAGCGCTCCG CACTGACGGC CGAGCTGTTC
TACGAAATCC TGATGGGCGA GATGACCGCG CGCTCCGGCG ATCCCGGGTC GGGCTACGCG
CTGGTGCTCG ATGCAGCCCG GCGGCTGCGC GATGGCAAGC TGTTCCAGCG CGCGGTCGAG
ATCGCGCTGC AGTCGCGCTC CGGCGACGCG GCGCTCGCGG CCTCGCGCGC ATGGCAGGAA
ACGCTGCCCA ACTCGCGTGA TGCACGGCGC ATCGAGCTGC AGATACTGAT CGCGCTCAAC
CGCATCGGCG AAACGGTGGA GCCGCTGCGG GCCGAGATCG CGGCCACGCC GCAGATCGAG
AAGCCGCTGC TGATGGCGGT GATCGCGCGC AACTACTCGC GCGCCTCAGA CAAGAAGCAG
GCCGCCTCGG TGGTCGAGCA GGCGCTGGCC GACGAACTCA AGAGCCCGGC CACCGGTGCG
CTGGCCTGGG CCACCATCGG CCGCATGCGC CTGAATGCCG GCGACACCTC GGGCGCACTG
GACGCCGCGT TCAAGGGCCA GCAGATGGAC CCCGCCTCCG ATGCTCCGGC CGCACTTGCG
CTCGAGATGA TCGACCCCGG CCAGCCGCTC GCGGAGCCGA TCGTCACGCG CTACCTGGCC
AACAACCCGA AGGCGCCGCC CGACCTGCGC ATCGCCTACG CGCGCGTGCT GGTCGAGAAC
CGCCGCTATG CGGATTCCAC CGCGCAGCTG CAGGCGCTCA CCGCGGCCCG GCCCGAACTG
GCCGAGCCCT GGCTGCTGCT CGGCAGCCTG CAGGCGCAGG CCCGGCAGGA CGCGGCAGCC
GAAACCTCGC TCAAGCGCTA CATCGACTTG GCGGCCAACC AGAAGGACCC GGACGACCGC
CAGCGCGGCA CCACCCAGGC CTACCTCGTG CTCTCGCAGC TGGCGGAGCG CCGCAAGGAC
TTCACGGCCG CGGAGCGCTG GCTCGCACGC GTCGACGGCA CCGACGAGCT CGTGGTCGCG
CAGACGCGCC GCGCGGGCCT GCTGGCGCGC CAGGGCAAGC TGCCGCAGGC GCGCGAACTC
GTGCGCGGCC TGCCCGAGCG TGCGCCCGAG GACAAGAAGC AGAAATTCCT CGCCGAAGTG
CAGCTGCTGC GCGATGCCAA GCAGTACCAG GCGGCCTACG ACATGCTGGC GCAGGCTTCT
GCCGCCGCCC CGAACGACAG CGACCTGGTC TACGACCAGG CCATGGTGGC CGAAAAGCTC
AACCGCCTCG ACGAGATGGA GCGGCTGCTG CGCAGGCTGA TCGAGCTCAA GCCCGAGAAC
CAGAACGCCT ACAACGCGCT CGGCTACTCC TTTGCCGATC GCAAGATCCG CCTCGACGAG
GCCCGCACGC TGATCCAGAA GGCCGTGCAG CTGGCGCCGG AAGACCCCTT CATCGCGGAC
AGCCTGGGCT GGGTGGAATT CCGGCTGGGC AACACGACCG AGGCCATCCG CATCCTCGAG
ACGGCCTACA AGACCCGGCC CGATCCGGAG ATCGGCGCGC ATTTCGGCGA GGTGCTCTGG
GCCACCGGCC AGAAGGACCG CGCGGTCACG ATCTGGAAGG AAGCCCTGCT GAGCGACGCC
GAGAACGAGA CCCTGCAGGA AACGCTCAAG CGCCTGCGGG TCAAGCCGTG A
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| Protein sequence | MIPSLRRHRL AAAASFVVLL ACAAHAQSSD PAAPRSPAPI IERPAPSRPG TKPAPAAAAA
AAKPAGDPEA QRSALTAELF YEILMGEMTA RSGDPGSGYA LVLDAARRLR DGKLFQRAVE
IALQSRSGDA ALAASRAWQE TLPNSRDARR IELQILIALN RIGETVEPLR AEIAATPQIE
KPLLMAVIAR NYSRASDKKQ AASVVEQALA DELKSPATGA LAWATIGRMR LNAGDTSGAL
DAAFKGQQMD PASDAPAALA LEMIDPGQPL AEPIVTRYLA NNPKAPPDLR IAYARVLVEN
RRYADSTAQL QALTAARPEL AEPWLLLGSL QAQARQDAAA ETSLKRYIDL AANQKDPDDR
QRGTTQAYLV LSQLAERRKD FTAAERWLAR VDGTDELVVA QTRRAGLLAR QGKLPQAREL
VRGLPERAPE DKKQKFLAEV QLLRDAKQYQ AAYDMLAQAS AAAPNDSDLV YDQAMVAEKL
NRLDEMERLL RRLIELKPEN QNAYNALGYS FADRKIRLDE ARTLIQKAVQ LAPEDPFIAD
SLGWVEFRLG NTTEAIRILE TAYKTRPDPE IGAHFGEVLW ATGQKDRAVT IWKEALLSDA
ENETLQETLK RLRVKP
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