| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4339 |
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| Symbol | |
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| ID | 7970529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4584525 |
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| End bp | 4585586 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794927 |
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| Product | A/G-specific adenine glycosylase |
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| Protein accession | YP_002946216 |
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| Protein GI | 239817306 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1194] A/G-specific DNA glycosylase |
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| TIGRFAM ID | [TIGR01084] A/G-specific adenine glycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00948332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCGGCTG CGGCCGTGCA GCCGCAGGCG CCGGCCGATT TTGGCGAGCG CGTCGTGGCC
TGGCAGCGCA GCCACGGGCG CAGCGCGCTG CCGTGGCAGA ACACGCGGGA TCCCTACCGC
GTGTGGCTGT CGGAAGTCAT GCTCCAGCAG ACCCAGGTCT CGACCGTGCT CGGGTACTTC
GCGCGCTTTC TCGAACGCTT TCCGACCGTG CGGGCGCTGG CCAACGGCAC CGAGGACGAG
GTCTTCGGGC TCTGGAGCGG CCTGGGCTAC TACAGCCGCG CCCGCAACAT GCACCGCTGC
GCGCAGGAGG TGGTGGCGCG CTTCGGCGGC GAGTTTCCGC GCACGGCCGC CGAGCTCGAG
ACCCTGCCCG GCATCGGCCG CTCCACCTCG GCGGCGATCG CGGCCTTCTG CTTCGGAGAG
CGGGTCGCGA TTCTCGACGG CAACGTCAAG CGCGTGCTGA CGCGCGTGCT CGGCTTTGGC
GGCGACATGT CCTCGTCGGC GCAGGAACGC GCACTGTGGG ACCAGGCCAC CCAGCTGCTG
CCGCCGGCCG AGCAGAAGGA AGCGATCGCG AGCTACACGC AAGGCGTGAT GGACCTGGGC
GCCACGGTCT GCCTGCCGCG CAAGCCGAGC TGCATGATCT GTCCGCTGAA CAAGGCATGC
GTGGGGCTGC GCGAGGGCCA GCCCGAGCGC TATCCGGTCA AGACGCGCAA GCTCAAGCGC
AGCGCCCAGT CGCTCTGGGC GCTGCTCGCG CGCGATGCGC AAGGCCGCGT CTGGCTCGAG
AAGCGGTCGG CCAAGGGCAT CTGGGCCGGG CTCTACTGCC TGCCCGTGTT CGATAGCCGA
GAAGAGTTGC TGGCCGCGCT GCCGCCGGCG GCGCTGGCCG GCGCACAGGA CCTGCCGCCT
TTCGTGCATG TGCTGACCCA CAAGGACCTG CACCTGCACC CGGTGCTGCT CCAGGGCAGC
CAGCCGAAAG GCGATGCGGC GCGCTGGGTG GATGCGCAGG AGTGGGGCCG GCTGGGATTG
CCGGCGCCGA TGCGCAAGCT GCTCGAGAGC AGCGCGGGTT AG
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| Protein sequence | MPAAAVQPQA PADFGERVVA WQRSHGRSAL PWQNTRDPYR VWLSEVMLQQ TQVSTVLGYF
ARFLERFPTV RALANGTEDE VFGLWSGLGY YSRARNMHRC AQEVVARFGG EFPRTAAELE
TLPGIGRSTS AAIAAFCFGE RVAILDGNVK RVLTRVLGFG GDMSSSAQER ALWDQATQLL
PPAEQKEAIA SYTQGVMDLG ATVCLPRKPS CMICPLNKAC VGLREGQPER YPVKTRKLKR
SAQSLWALLA RDAQGRVWLE KRSAKGIWAG LYCLPVFDSR EELLAALPPA ALAGAQDLPP
FVHVLTHKDL HLHPVLLQGS QPKGDAARWV DAQEWGRLGL PAPMRKLLES SAG
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