| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4338 |
|---|
| Symbol | |
|---|
| ID | 7970528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4583631 |
|---|
| End bp | 4584509 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794926 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946215 |
|---|
| Protein GI | 239817305 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1660] Predicted P-loop-containing kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0459562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTCG ACCTGGTGCT CATCACCGGC ATGTCGGGCT CGGGCAAGTC GGTGGCGCTG
CATGCGCTGG AAGACGCCGG CTACTACTGC GTCGACAACC TGCCGCCCGA ACTGCTGACG
GCCTTCATCG CGCTGCAGCA CGAGCAGCAG GCCACGCGCG TGGCCATTGC GATGGACGTG
CGCAGCGGCG TGTCGCTGCC AATCGTTCCG CAGCAGCTCG AAGCCCTGCG GCAGGACGGC
GTTTCGCTGC GCTCGCTTTT CCTCGACGCG ACCACCGACG CGCTGCTGCG GCGCTATTCG
GAAACCCGCC GGCGCCATCC GCTGTCGCGC CAGGAGGGCC GCAACGACGT GCCCGAACAG
GAGCGCGTGC TGGTACAGGC CATCGAGCTC GAGCGCGAGC TGCTGGCCGA CCTGCGCGAC
GGCGCCGACG TGATCGACAC CAGCCTCATC CGGCCGGCCC AGCTGCAGAG CTACATCAAG
GCGCTGATCT CGGCGCCGCA GAGCAGCGCA TTGACGCTGG TGTTCGAATC CTTCGCCTTC
AAGCGCGGCG TGCCGCTGGA TGCCGACTAC GTGTTCGACG TGCGCATGCT GCCCAATCCG
CACTACGTGC CTGCGCTGCG GCCGCTCACG GGCCGCGATG CGCCGGTGGT CGAATGGCTG
CGCGAGCACG ACGACGTTGC GCGCATGTAC GACGACATCG AGCAGTTCCT CTCGCGCTGG
CTCGACGCGC TGGCGCGGGA CCATCGCAGC TACGTGACCG TGGCCATCGG CTGCACGGGC
GGCCAGCACC GCTCGGTGTT CCTGGTCGAG CAGCTCGCGC GCGCGTTCGG AACGCGCTGG
GTCGCGCTCA AGCGGCACCG CGAGCTCGAC GCAGGCTGA
|
|---|
| Protein sequence | MDLDLVLITG MSGSGKSVAL HALEDAGYYC VDNLPPELLT AFIALQHEQQ ATRVAIAMDV
RSGVSLPIVP QQLEALRQDG VSLRSLFLDA TTDALLRRYS ETRRRHPLSR QEGRNDVPEQ
ERVLVQAIEL ERELLADLRD GADVIDTSLI RPAQLQSYIK ALISAPQSSA LTLVFESFAF
KRGVPLDADY VFDVRMLPNP HYVPALRPLT GRDAPVVEWL REHDDVARMY DDIEQFLSRW
LDALARDHRS YVTVAIGCTG GQHRSVFLVE QLARAFGTRW VALKRHRELD AG
|
|---|
| |