| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4337 |
|---|
| Symbol | |
|---|
| ID | 7970527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4581952 |
|---|
| End bp | 4583631 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644794925 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_002946214 |
|---|
| Protein GI | 239817304 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0513473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTGC GACGCATCGC ATTGCGCGAC TTCGTGATCG TGCGATCACT TGAACTCGAC
CTGTCGGCAG GCTTCACGGT ATTGACCGGC GAGACCGGCG CGGGCAAGTC GATACTGATC
GATGCGCTGC AGCTCGCGCT CGGCAACCGG GCCGACGCGG GCGCGGTGCG CGAGGGCGCC
GAACGGCTCG ACGTCAGCGC CGAATTCGAT GCCGACCCGG CACTCGCGGC CTGGCTCGAC
GAGGGGGGCT TCGAAAACGG CGACGCCCTG CTGCTGCGCC GCACCGTCGA CCTGCAGGGC
CGCAGCCGCG GCTGGATCAA CGGCAGCCCG GCCACCGCCA CCCAGCTGCG CGAACTCGGC
GACCGCCTGC TCGACATCCA CGGCCAGCAC GCATGGCAGA GCCTCACGCG CCCCGAGGCC
GTGCGCGGCC TGCTCGACGC CTACGCCGGC GTGCGCACCG ATGCGCTGGA CGCGGCCTGG
CAGCACTGGC GCCAGGCGCT TTCCGCGCTC GACCATGCGC GCTCGGCGCA AGACTCGCTG
CTGCGCGAAC GCGAGCGGCT GCAATGGCAG ATCGCCGAGG TCATGAAGCT GGCGCCGGCC
GAAGGCGAGT GGGAAGAGCT TTCCACCCAG CACGCGCGCG TCTCCAATGC ACAGGCACTC
ATCGACGCGG CGCAGGGCGC AAGCCAGGCG CTCGAAGACG ACGACAGCGG CGCGCTCGCC
GCCCTGTCGC GCGCCGTCAC GCTGCTGCAG AACTGCGAGC ACATCGAGCC TGAATTCCGC
GCCCTCGGCG AAGTGCTGGC CTCCAGCGTC GCCCAGGCTT CCGATGCCGC CCACACGCTG
CACAGCTACC TGCGCGACGC CGAGGCCGAT CCGCAGCGGC TGGCCGAACT CGACGAGCGC
ATGGGGCTGT GGATGTCGCT CGCGCGCCGC TACAAGCGCA CGCCGGACGA CCTGCCGGCG
CTCCTGGCCG GCTGGCAGGC CGAGCTGCAG GCGCTCGATG CGCAGAGCGA TCTCGCAGGC
CTGGAGCGCG CCGAGCAGGG CGCGCAGCAG GCCTACATGA AGGAAGCCAA GGCGCTCGCC
AAGGCACGCA AGCTGGCCGC CCCGCGGCTG GCCGAGGCGG TCACGCAGGC GATGCAGGGG
CTTGGCATGC AGGGCGGGCG CTTCGAGGTC GAGCTGCTGC CGCTGGCGCA GCCGGGCCGC
GCGGGTCTCG AAGACGTCGC CTTTCTCGTG AGCGGCCATC CCGGGAGCAC GCCGCGCCCC
ATCGGCAAGG TGGCTTCGGG CGGCGAGCTC TCGCGCATCG CACTGGCCAT TGCGGTCACG
ACCAGCCAGC TCGGCGCCGC GCAGACGCTG ATCTTCGACG AGGTCGATGC CGGCGTCGGC
GGCGCCGTGG CCGAGACCGT GGGCCGGCTC ATGAAGCAGC TCGGGCGCGA TCGCCAGGTG
CTGGCGGTCA CCCACCTGCC GCAGGTTGCC GCCTGCGCCG ACCACCACCT GGTGGTGGCC
AAGCGCCAGA CGGCGGCAGC CGGCCAGGAC GGCCCGCGCA CCGAAAGCGG CGTCTCGCGG
CTCGACGACG ACACCCGCGC CCGCGAAATC GCGCGCATGC TCGGCGGCGA GAAGCTTTCG
CAGACCTCGC TGGCGCATGC CCGCGAAATG CTGGGCCACA AGACTTCGGC GGCGCTGTGA
|
|---|
| Protein sequence | MALRRIALRD FVIVRSLELD LSAGFTVLTG ETGAGKSILI DALQLALGNR ADAGAVREGA
ERLDVSAEFD ADPALAAWLD EGGFENGDAL LLRRTVDLQG RSRGWINGSP ATATQLRELG
DRLLDIHGQH AWQSLTRPEA VRGLLDAYAG VRTDALDAAW QHWRQALSAL DHARSAQDSL
LRERERLQWQ IAEVMKLAPA EGEWEELSTQ HARVSNAQAL IDAAQGASQA LEDDDSGALA
ALSRAVTLLQ NCEHIEPEFR ALGEVLASSV AQASDAAHTL HSYLRDAEAD PQRLAELDER
MGLWMSLARR YKRTPDDLPA LLAGWQAELQ ALDAQSDLAG LERAEQGAQQ AYMKEAKALA
KARKLAAPRL AEAVTQAMQG LGMQGGRFEV ELLPLAQPGR AGLEDVAFLV SGHPGSTPRP
IGKVASGGEL SRIALAIAVT TSQLGAAQTL IFDEVDAGVG GAVAETVGRL MKQLGRDRQV
LAVTHLPQVA ACADHHLVVA KRQTAAAGQD GPRTESGVSR LDDDTRAREI ARMLGGEKLS
QTSLAHAREM LGHKTSAAL
|
|---|
| |