| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4331 |
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| Symbol | |
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| ID | 7970519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4574921 |
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| End bp | 4577179 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794917 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_002946208 |
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| Protein GI | 239817298 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.579234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGG TTGCCAAACA TCAGTCCCAT GCCCCCACGG GGGGCACGCC CAAGCCGAGT
CCGGCGGCGC TGAATGCGGC TGCCGCGAGC TTTGCTGCGC TGACCGCCAG GCTCGACTAC
CTGAGCCCCG AAGACACCGA GCTGGTCCGG CGCGCCTACC GCTTTGCCGA CGAAGCCCAC
CTGGGCCAGC TGCGCAACAG CGGCGAGCCC TACATCACCC ACCCCATTGC CGTAGCGGCG
CAATGCGCCG AATGGAAGCT CGACGCACAG GCGCTGATGG CCGCCCTGCT GCACGATGCC
ATCGAGGACT GCGGGGTCAC CAAGCCCGAG CTGATCGAGC GCTTCGGCGC GCCGGTGGCC
GAGCTGGTCG ACGGGCTCAC CAAGCTGGAC AAGCTGCAGT TCAACACCCG CGAGGAAAAC
CAGGCCGAGT CGTTCCGCAA GATGCTGCTG GCCATGGCGC GCGATGTGCG CGTGATCCTG
GTCAAGCTGG CCGACCGCAC GCACAACATG CGCACGCTCG ACGATGCGCC GCGCGAGAAA
TGGGCCCGGA TCTCGCGCGA AACGCTCGAG ATCTACGCGC CCATTGCGCA CCGGCTGGGC
CTGAACCAGA CCTACCGCGA ACTGCAGGAA CTCTCGTTCC GCCATCTGAA ACCGTGGCGC
TACGCCACCC TGTCCAAGGC GGTGGCCAAG GCGCGCGGGC GCCGCCGCGA CCTGATCCAG
AAGGTGCAGC GCGAGGTCGA GACCGCCTTT GCCAACGCCA ACATGACGCT GCGCATCGCG
GGACGCGAGA AAACGCTCTA TTCGATCTAC CGCAAGATGG AAGAAAAGCA CCTGAGCTTC
GCCCAGGTGA CCGACATCTA CGGCTTTCGC CTGATCGTGC CGAACGTGAT CGCCTGCTAC
ACCGGCCTGG GCATCCTGCA CCAGATGTAC AAGCCGCTGC CGGGCAAGTT CAAGGACCAC
ATCGCGATCG CCAAGCTCAA CGGCTACCAG TCGCTGCACA CCACGCTGGT GGGCCCGGCC
GGCGTGAACG TGGAGTTCCA GCTGCGCACC GAGGCCATGC ACGTGGTGGC CGAATCGGGC
GTGGCGGCGC ACTGGCTCTA CAAGGCGGCC GAGCCGAACG CGGCCAGCAA CGACCGGCTC
GGCACCAAGT GGCTGCAGTC GCTGCTCGAC ATCCAGGACG AAACCCGCGA CGCCGCCGAG
TTCTGGGACC ACGTCAAGGT CGACCTGTTC CCCGACGCGG TCTACGTCTT CACGCCGAAG
AGCCAGATCC TCGCGCTGCC GCGCGGCGCC ACGGTGGTCG ACTTTGCCTA TGCCATCCAC
AGCAACATCG GCGACCACAC CTCCGCGGCG CGCATCAACG GCGACCAGGT GCCGCTGCGA
ACGGAGCTCA AGAACGGGGA CGTGGTCGAG GTCATCACCG CGCCCGTGTC CACACCCAAT
CCCGCGTGGC TCGGCTTCGT GCGAACCGGC CGGGCGCGCT CCAAGATCCG CCACTACCTG
AAGACCCTGG CCCATGCCGA ATCCGAAGGC CTGGGCGAGA AGCTGCTGGC CCAGGCACTG
CGCGCCGAAG GCCTCAGCAA GCTGCCGGCC GAGGACGCCG AGCACCAGGC GCTGTGGGAA
AAGCTGCTGC GCTTCACCGG CAACCGCACG CGCGCCGAGC TGCTGACCGA CATTGGCCTG
GGCAAGCGGA TTGCCAGCAT CGTGGCAAAG CGGCTGGTGG CCATGCTGTC CGAACTCGGC
GAGCGGCCCG ATGCGCTGCT GCTGAGCCGC GAGCGCTTCA TCTCGCACGA GACCATTTCC
CAGGGCGCCG TCACGCTGGA TGGCAGCGAG AACTCGTCGG TCCGCTTTGC ACTGTGCTGC
CGGCCGATTC CGGGCGACGA GATCGTGGGC TACCTCGGCC ATGGCGAAGG CCTGGTCGTG
CACACCGAGT CCTGCGGCGT GGGCCAGCGC CTGCGCCACA AGGACAGCGA GCGTTTCTTC
GCGGTCGAAT GGGCGGACGA GCCGACCCGC ACCTTCGAAA CCGGCGTGGT CATCACGGTG
CGCAACGACA AGGGCGTGCT CGCGCGCGTG GCCGCGACCC TGGCCGACGC CGAAGCCGAC
ATCACGCACG TCGAAATGGC CGACGAGACG CCGCAGGATT CGACCGACCT GCGCTTCGTG
ATTGCGGTGC GCGACCGCAC CCACCTGGAC GGCGTGCTGC GCGCCGCGCG GCGCACGGCC
TCTGTGCTGA CCGCCGCAAG GACGGTTCCC GCGCCCTGA
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| Protein sequence | MSAVAKHQSH APTGGTPKPS PAALNAAAAS FAALTARLDY LSPEDTELVR RAYRFADEAH
LGQLRNSGEP YITHPIAVAA QCAEWKLDAQ ALMAALLHDA IEDCGVTKPE LIERFGAPVA
ELVDGLTKLD KLQFNTREEN QAESFRKMLL AMARDVRVIL VKLADRTHNM RTLDDAPREK
WARISRETLE IYAPIAHRLG LNQTYRELQE LSFRHLKPWR YATLSKAVAK ARGRRRDLIQ
KVQREVETAF ANANMTLRIA GREKTLYSIY RKMEEKHLSF AQVTDIYGFR LIVPNVIACY
TGLGILHQMY KPLPGKFKDH IAIAKLNGYQ SLHTTLVGPA GVNVEFQLRT EAMHVVAESG
VAAHWLYKAA EPNAASNDRL GTKWLQSLLD IQDETRDAAE FWDHVKVDLF PDAVYVFTPK
SQILALPRGA TVVDFAYAIH SNIGDHTSAA RINGDQVPLR TELKNGDVVE VITAPVSTPN
PAWLGFVRTG RARSKIRHYL KTLAHAESEG LGEKLLAQAL RAEGLSKLPA EDAEHQALWE
KLLRFTGNRT RAELLTDIGL GKRIASIVAK RLVAMLSELG ERPDALLLSR ERFISHETIS
QGAVTLDGSE NSSVRFALCC RPIPGDEIVG YLGHGEGLVV HTESCGVGQR LRHKDSERFF
AVEWADEPTR TFETGVVITV RNDKGVLARV AATLADAEAD ITHVEMADET PQDSTDLRFV
IAVRDRTHLD GVLRAARRTA SVLTAARTVP AP
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