| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4321 |
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| Symbol | |
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| ID | 7970508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4566126 |
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| End bp | 4567730 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794907 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_002946199 |
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| Protein GI | 239817289 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAG CTTCCACTCC CCTCGCGGCC GAGACCATTC CGGACACGTC CATTGGTCCA
TGGCCGGCGA CCGACGCCAG TTCTCTTGCC CGGAAAACAG ACGCGCAACG AAGCCGCGTC
ATCTACGGTA CTACTTTGTT TGTAGTCTTT GTGTGCGCGG CGTTGCTGGT CATGAACGCA
TGGCTGGTCG TTCGTGCGCG CACGGCGGAA AACGAGCAGA TCGCGCGGGC GAATACCAAC
CTGGCACGCG CGGTCAGCCA GCAGATCGAT AGTACGGCTG CCCTGGCCGA GCACATCATC
TCGGGCCTCG TCTTCGAACT CGAGCGCGCG GACATCACGC CCGACTCCCT GCAGCGTCTT
CAACCGGTCC TCGTGAACCA TGTCGCCGAA GTTCAAGCCA TCAAGGGAAT CTTCATCTAC
GACGAGCAAG GCCGATGGCT GGTCTATTCC GATGCATCCC CGGCGGGTAC CCGAAGCAAT
TCGGATCGCG AATATTTCAT TCACCACCGG ACCAACCCGA GCGCGCGGAC GCTGATCAGC
GGCCCCATCG TGAGCCGCTC TTCGGGCGAG TGGGTGATCC CGGTGTCGCG CAGGATCAAC
GACCCGGACG GCAACTTCGC CGGCGTGGTG CTGGTCACGC TCAGCGTCAA GCATCTGCTG
AGTGTCCTGG ACCACTTTCA GATCGGCGAG CAAGGAGCAA TTGCGCTGTT CGGGACGGAC
CAACTGCTGC TCCGCCGCCC CTTCAGGGAA GCCGACCTGG GCAGGCGCAG TACGGATACG
CCGTTGCAGC AGCGTTTCCG GGCCGCGCGC TCGGGCACCG TCGAGGGAAG ATCGGCGATC
GATGGCGTGA CACGGATCAT CAGCTTCGAG CATCTGCTGA ACTACCCGCT CTTCGTGACC
GTTGCCGTCG GCAAGGACGA GGCGCTGCAG GAATGGAAAT CCGCGTCGAT CTATCAAACG
GCTTGGGTGG TTCTTTTGTG CCTGGTCGTC GGGGTGTCAG GCCGCCACTT GATCCGGTCG
ATGCGCAGGC GACTGGTGGC GGAACTGCAG CTGCGAAGTG CCCGGGACGC GCTGACGGAG
GCCAATGAGC GCCTGGAACA TCTTGCGCAG GAAGACGGGC TGACAGGCCT GGCCAACCGC
CGCTACTTCG ACGCCCGCCT GGCCCTCAAC TTCCAACAGG CGCTGGCAAG CCAAACGGCG
CTGGCGGTCG TCATGGTCGA CGTCGACGAG TTCAAGAAGT ACAACGATCT GTACGGGCAT
CTTGAAGGCG ACGACTGCTT GCGGCGGGTC TCCCAGGCAC TGCGGTCGGC CGTGTGGCGC
TCGAGCGACC TTGTCGCGCG CTACGGGGGC GAAGAAATGG TTTTGTTGTT GCCCGCGACG
GACGCCGCAG GTGCACTCGA GGTTGCGCAA AGGGCGCGGC TGGCCGTGGC CGATCTGCAG
ATCCCTCATG CGGCGTCGGC GCTGGGCACC GTCTCCGTCA GCCTTGGCGT GGCGTCCGGG
GTTCCGCAGC CCGGCAGCAC GCCGTTCGAA CTGCTGAGAG CCGCGGACGA AGCACTCTAC
CTTGCCAAGC AGGAGGGGCG AAACACCGTC AGGGTGCACG CCTGA
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| Protein sequence | MKEASTPLAA ETIPDTSIGP WPATDASSLA RKTDAQRSRV IYGTTLFVVF VCAALLVMNA
WLVVRARTAE NEQIARANTN LARAVSQQID STAALAEHII SGLVFELERA DITPDSLQRL
QPVLVNHVAE VQAIKGIFIY DEQGRWLVYS DASPAGTRSN SDREYFIHHR TNPSARTLIS
GPIVSRSSGE WVIPVSRRIN DPDGNFAGVV LVTLSVKHLL SVLDHFQIGE QGAIALFGTD
QLLLRRPFRE ADLGRRSTDT PLQQRFRAAR SGTVEGRSAI DGVTRIISFE HLLNYPLFVT
VAVGKDEALQ EWKSASIYQT AWVVLLCLVV GVSGRHLIRS MRRRLVAELQ LRSARDALTE
ANERLEHLAQ EDGLTGLANR RYFDARLALN FQQALASQTA LAVVMVDVDE FKKYNDLYGH
LEGDDCLRRV SQALRSAVWR SSDLVARYGG EEMVLLLPAT DAAGALEVAQ RARLAVADLQ
IPHAASALGT VSVSLGVASG VPQPGSTPFE LLRAADEALY LAKQEGRNTV RVHA
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