| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4318 |
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| Symbol | |
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| ID | 7970505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4561938 |
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| End bp | 4562921 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794904 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002946196 |
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| Protein GI | 239817286 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.445134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTG ACGCCCTTCC CTTGCCCATC TGGACTTCCC GTCCTGCCCG TCCCGTCGTT
CGTCTGTTGG TCACCGTGCT GATGGTGGCT GCAGCCGGCT GGGCAGGCTG GCGCCTCTGG
GACCACTATG AACTCGCCCC GTGGACACGC AACGGACGCG TGCGGGCCAA TGTCGTGCAA
GTGGCGCCTG ACGTGTCTGG CATGGTCGCG AATGTGGCGG TGCACGACAA CCAGTCCGTC
GCCGCTGGCG CCTTGCTGTT CTCGGTGGAC AAGGCCCGCT TCGAGCTGGC GCTGGAACAG
GCCCAGGCCG CCGCCGAGAC GCAGCGCATC GCGATCAGCA ACCAGCGCAT CACGCTCGCA
CAGGCGCAGC GCGAGAGCCG GCGCAATGCC GACCTGGGCG ATTTGATCTC GCTGGAAGCT
CGCGAGCAGT CGCGCCTGAA GGTGGACCAG GCCAAAGGCG CACTTCAAGC TGCCGAAGCG
GCATTGCGGC AGGCGCAGGT TGCGTTGAAC GCCTCGACGT TGAACCTGGA GCGCACCCAG
GTGCGCGCAC CCACCGCGGG GCTGGTCACC AACCTCGACC TGCGCCAGGG CGCCTATGCG
AGCGCCGGCC ACCCCGTGAT GGCGTTGGTC GACGCGGACT CCATCTATGT CGAAGGCTAT
TTTGAGGAAA ACAAGTTGGC TCGGATTCAT CAGGGCGACC GTGTGCGAGT CACGCCGATG
GGTGGCCCGG CGCTCGAGGG CACCGTCGAA AGCATCGCGG CCGGGATCGC CGACCGTGAC
CGCAGCACCA GCACCAACCT GCTTCCCAGC GTCAATCCCA CGTTCAACTG GGTGCGGCTT
GCGCAGCGTG TGCCCGTGCG CGTGAAGCTC GATCAGACGC CCTCGGGCAC GCGTTTGGTG
GCGGGCCAGA CGGTCACCGT TGAAATACTC GAGACTGCAG GGACCACCGA TGCCACGGCC
CGGACTTCAG GAAGCCGGGG GTGA
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| Protein sequence | MKSDALPLPI WTSRPARPVV RLLVTVLMVA AAGWAGWRLW DHYELAPWTR NGRVRANVVQ
VAPDVSGMVA NVAVHDNQSV AAGALLFSVD KARFELALEQ AQAAAETQRI AISNQRITLA
QAQRESRRNA DLGDLISLEA REQSRLKVDQ AKGALQAAEA ALRQAQVALN ASTLNLERTQ
VRAPTAGLVT NLDLRQGAYA SAGHPVMALV DADSIYVEGY FEENKLARIH QGDRVRVTPM
GGPALEGTVE SIAAGIADRD RSTSTNLLPS VNPTFNWVRL AQRVPVRVKL DQTPSGTRLV
AGQTVTVEIL ETAGTTDATA RTSGSRG
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