Gene Vapar_4316 details

Gene Information

• Locus tag: Vapar_4316
• ID: 7970503
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4559690
• End bp: 4561708
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644794902
• Product: Fusaric acid resistance protein conserved region
• Protein accession: YP_002946194
• Protein GI: 239817284
• COG category: [S] Function unknown
• COG ID: [COG1289] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.888384
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGCGC TGCCCCGCTT CTCTCGGCAG GAGTTGCTCT TTTCTCTCAA GAGCTTCGTC 
GCCGCCATGC TGGCGCTCTA CCTGTCGAGC CGCTTCGGAC TACCCCGGCC CTTCTGGGCC 
ATGATGACCG CCTACATCGT GGCCCACCCT CTGGCCAGCC ATGTGCGCTC CAAGGCGCTC 
TACCGATTCC TGGGCACCTT GCTGGGGTGC GCTGCGACCG TGGTGCTCGT CCCCTCGCTG 
TCCGGGTCCC CGGAACTCCT GTCGCTGGCC TTGGCGCTGT GGGTGGGACT GTGCCTTTAT 
GTTTCGCTGC TGGACCGAAG CGCGCGTTCC TACGTCTTCA TGCTGGCTGG CTACTCAGCC 
CCTTTGATCG GCTTCCCTCT GGTAGAAGCT CCCGCGGCGA TGTTCGACAC GGCCGTCGCA 
CGGGTCACTG AAATCGGGCT GGGCATCCTG TGCGCCAGCG TGGTCCACAG CATCGCGCTT 
CCTGCCGGCC TGGCCCCGTC CCTGCTTGGC GTGATGGATC GCGCACTTGG CGATGCGCGG 
CAATGGCTCG CCGATCTGCT GCGCGAGCCG CCGAGCGACG CAAATCACGC TCGAATGTCG 
GCGGACCGCC AGCGGTTGGC CCTGGACATC ACACAACTGC GACTGCTGTC CACGCATGTG 
CCCTTTGACA CCCATCTGCG CTGGAGCGGG GGCGCCATCG ACGCACTGCA GGACCGTCTG 
GTCGCCCTCA CCCCGGTGGT GTCGGCGGTG GAAGATCGCC TGCAAGCGCT GTGCAACGCC 
ACAGGCGGTG TGCCGGATGA CATCGGCTCG ACCTTCGCGC AGCATTCAGG CTGGCTGGCC 
GCGAGCGCGA CGAACGCGGG CGTGGATAAA GCGCGCGTCG CCTTTCGCGC CATTGCGGAC 
GGTCCGGCCG CTTCAGCCTG GATCCGCGCG CTGCGGATTG ATCTGGCAAC CCGTCTGGAG 
GACCTGGTTG CGCACTGGGA TGCCTGCACC ACGTTGCGCA ACGCTATCGA CGCTGGCGTT 
GCCGGGAACG CGGTGCCGTT GCGGCGCACC GCGGCTCTGG GTCGCAGGGT GCTTCACTTG 
GACAGAGGGC TCGCGCTGCG GTCGGCGATC ACTGCGGTGC TGGGCACCTG CCTATCGTGT 
GCTCTGTGGA TTGCAACGGG CTGGCCCTCG GGATTCGCCA TGGCCATGGG CGCTGCCGTC 
TTTTGCAGCT TCTTCGCCAC CATGGACGAT CCGGTGCCAG CCATGCACAA GTTCATCACA 
GCGCTGTTGT GGTCGTTGCC CGTGTCTGTC TTTTATGTCT TGGGGGTCAT TCCGCTGGCA 
CATGACTTTG GCATGCTGGT GCTGTGCATC GCGCCTGTGT TCTTGGTCGT CGGGTGCTAC 
ATGGCACGGC CGGCCAGTTC CTTGTCGGCC CTTGGCATGT TCTTCGGTGT CGCCGGAACG 
CTCGCCCTTC AAGATACGGC CACCGCCGAT TGGGTGAGCT TCATCAGTTC CAACCTGGCC 
TTGTTCGTGG GTGCGGTGAT CGCGGCCCGC GTCACCGCTC TCATGCGAAG CGTGGGGCGT 
GACTGGACGG CCAAGCGCAT ACGCCGCGCG ACATGGCACG ACCTTGCCGA TCTGGCTGCC 
CATCCGCAGG ACGCATCCGC CCGAGACGCC TTTGGCTCAC GCATGCTCGA CAGGATGGCG 
CTGTTGGCGC CGCGCGTGGC GCCCGACGGT CCCGAAGCGG TCCAGACCGC GGCACACCGC 
GCGCTTCGCG AACTGCGCCT GGGGGCAGAC ATCGCTGCGC TGCAGCGGCA TCGCGGCCGC 
CTTGCGGAAG AACCCGTCAG TCACCTCTTC AGGGAATTGG CCCTCGTCTT CCGCGCCTAT 
GTGGCGGGCC CGCCACCGCG TCATGCCTCG CTGCGGCCGC ATATCGATCG GCTGTTGCTT 
GACGCCCTGA CGGCGGGCGC CGAGCGGCCT GCCGTCGCGG CACTCGTGGG CCTTCGACGC 
AACCTCTTTC CAACCGCTCT GCCTGCGCTC CAACCATGA 

 

Protein sequence

MIALPRFSRQ ELLFSLKSFV AAMLALYLSS RFGLPRPFWA MMTAYIVAHP LASHVRSKAL 
YRFLGTLLGC AATVVLVPSL SGSPELLSLA LALWVGLCLY VSLLDRSARS YVFMLAGYSA 
PLIGFPLVEA PAAMFDTAVA RVTEIGLGIL CASVVHSIAL PAGLAPSLLG VMDRALGDAR 
QWLADLLREP PSDANHARMS ADRQRLALDI TQLRLLSTHV PFDTHLRWSG GAIDALQDRL 
VALTPVVSAV EDRLQALCNA TGGVPDDIGS TFAQHSGWLA ASATNAGVDK ARVAFRAIAD 
GPAASAWIRA LRIDLATRLE DLVAHWDACT TLRNAIDAGV AGNAVPLRRT AALGRRVLHL 
DRGLALRSAI TAVLGTCLSC ALWIATGWPS GFAMAMGAAV FCSFFATMDD PVPAMHKFIT 
ALLWSLPVSV FYVLGVIPLA HDFGMLVLCI APVFLVVGCY MARPASSLSA LGMFFGVAGT 
LALQDTATAD WVSFISSNLA LFVGAVIAAR VTALMRSVGR DWTAKRIRRA TWHDLADLAA 
HPQDASARDA FGSRMLDRMA LLAPRVAPDG PEAVQTAAHR ALRELRLGAD IAALQRHRGR 
LAEEPVSHLF RELALVFRAY VAGPPPRHAS LRPHIDRLLL DALTAGAERP AVAALVGLRR 
NLFPTALPAL QP