| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4307 |
|---|
| Symbol | |
|---|
| ID | 7970494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4550198 |
|---|
| End bp | 4551388 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794893 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_002946185 |
|---|
| Protein GI | 239817275 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCAA ATGCATTGAG CGGATTGAAG GTGATCGACT TCACCCAGGT CATGGCGGGT
CCCACGTGCA CACTGTGCAT GGCCGACCTC GGGGCCGACG TCGTGAAGGT GGAAGCCCCC
ACAGGCGATC TGTCGAGAGC GCTGTCGCCC TGGGTTCATG GCGAGGGCGT TCCTTTCCTG
GCGCTCAATC GCAACAAGCG CAGCATCGTG CTCGATCTGA AGCAGCCGAC CCACCGGCAA
GCGGCGCTGC AGCTGGTCGC GCAGGCGGAC GTGCTGGTGG AGAGCTTTCG CCCGGGCGTG
ATGGAACGCC TGGGGCTTGA CTACGCCACG GCGGCTGCGG CCAATCCGCG GCTGATCTAT
TGCTCCGTCT CCGCGTACGG TCAGCACGGG GCCGCCAAGG ACCTGCCCGG GGTGGACGGC
GTGCTGCAAG CCGTCAGCGG CCTCATGAGC GTCACCGGCG CGCCCGGCGG CGAGCCGTGC
AAGGTGCCGG TGCCCGTGGT CGATCTTGTC ACGGGGTCGT TCGCGGCCAT CTCGATCCTG
GCTGCCCTCG CGCAGCGCCA ACGCACCGGG TTGGGCCAGC ACGTGGAAGC AAGCATGTTC
GCCAGCGCCA TCGCGCTGCA GCATGTGAGT TTCGCGTCTT ATTTCGCGGA CGGCCATGTG
CCCGGCCCGC AGGGAAACGC CGCGCCGTAT TCGACGCCGA ACGAGGCCTT GCGTTGCGCC
GACGGGTGGA TCATGGTGGC GGCCTATCAC CCCGCGCGAT GGCAGGCCTT GTGTGCCGCC
ATCGGTGCGC CTGAGCTCGC ATCGGACCCG CGCTTTGCCG AGAACAAGGA TCGGTTGCAG
CACCGCGAGG CGCTGTTGCG CCTGCTCGAA GCACGCATGC TCGCGCATTC CCGTGCCTTC
TGGCTCGAGC AGTTCGCGGC CGTGGACATC ATCTGCGGGC CGATCAACAA CTATGCCGAG
GTCGCGCGGT CCGCGCCGTT CGTTGACGCG GCGCTCACAG AGACCTTGCA GCACCCGGTC
GCAGGTGCGT TGACGATGCC ACGCAGCGTG ATGGGTGCGG TTGGCGAGCG GCCCCAGGCG
CGACGAGCGG CTCCCACACT CGGACAGCAC ACCCGCGAGG TGTTGGTCGA ACTGGGCATG
CCACCGGAAA ACATCGAGGC GGTCATCGCC GCCGACTCTC CTTCGAACTG A
|
|---|
| Protein sequence | MLANALSGLK VIDFTQVMAG PTCTLCMADL GADVVKVEAP TGDLSRALSP WVHGEGVPFL
ALNRNKRSIV LDLKQPTHRQ AALQLVAQAD VLVESFRPGV MERLGLDYAT AAAANPRLIY
CSVSAYGQHG AAKDLPGVDG VLQAVSGLMS VTGAPGGEPC KVPVPVVDLV TGSFAAISIL
AALAQRQRTG LGQHVEASMF ASAIALQHVS FASYFADGHV PGPQGNAAPY STPNEALRCA
DGWIMVAAYH PARWQALCAA IGAPELASDP RFAENKDRLQ HREALLRLLE ARMLAHSRAF
WLEQFAAVDI ICGPINNYAE VARSAPFVDA ALTETLQHPV AGALTMPRSV MGAVGERPQA
RRAAPTLGQH TREVLVELGM PPENIEAVIA ADSPSN
|
|---|
| |