| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4295 |
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| Symbol | |
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| ID | 7970482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4538742 |
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| End bp | 4539920 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794881 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002946173 |
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| Protein GI | 239817263 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCA AATTCGTTGC CGCCTTGGCG GTCTCACTCG CGACGATCGC CTTTCAGGCC
CGCGCCGACG TCATCAAGGT TGGCGTCATC GCGCCGATGT CCGGACCGTT TTCAGCCGTG
GGGCAAACCT GGGAGGGTGC GACCAAGGCG TACCAGAAGC TCAATGGCAC GACCGTGGGC
AAACACACGA TCGAGGTCAT CTATCGCGAC CTTCCGGAGA TCAACCCCGC GCAAGCCAAG
GCCCTGGCAC AGGAACTGAT TGTCAAGGAA GGCGCCCAGT ACATCGCCGG GCTCTATTTC
ACCCCTGACA CCTTGGCCGT GGCTGCGCTC GCGCAGGAGG CCAAGGTACC GGTCGTGATC
TTCAACGCAT CGACGTCCTC GCTTCTGGAC AAGTCGGACT TCCTGCTGCG CACGTCGTAC
ACCCTGCCGC AGATGGCGGT GCCCGTGGCC AAATACGCGC TGGAGAAGAA CGTCAGGAAT
GCCGTCACGC TGGTCAGCGA CTTTGGTCCC GGCCTGGACG CCGAGAAGTC TTTCACCACG
GCGTTTGTCA GCGGCGGAGG CAAGCTGCTC GAGGCCATCC GCGCGCCGTT GAAGACGACC
GACTTTGGTC CTCTGATGCA GCGCGTGAAG GCGCTCAAGC CCGATGCCCT CTACGTCTTC
GCCCCAGGCG GTCCTGCGAC CTACGCGATG GTCAAGGCAT ACAACGAGGC TGGGTTGAGG
GCGGCCGGCG TGCGCTTTCT CGGCACGGCC GAGACCGATG AGGACCAGCT GCGAGCGATC
GGCCCGGATC TTCTCGGCAT CGAGACGGGC ATGTTCTATT CGGCAACGCA CAACTCTGCG
CTGAACAACG CTGTCATCAA GGCCCTCGGC GAGGTTGCCC CCAAGGCCAT TCCGACCGTC
CAGCTTGCGA ACGCGTATGA CGGTCTGCAT GTGATCTATC ACATGGTCAA GGCAACCGAT
GGGAAGCGGG ACGGCGCCAA GGCGCTTGCC AGCGCCAAGG GTCATTCCTG GGAAAGTCCG
CGAGGCCCCG TGAAGATCGA CCCGGCTTCG CGCGAGTTCG TGCAGAACGT CTACATGCGC
GTGGTCGAAA AGGACCCGTC CGGACGCTAC GTCAACCGGG AATTCCGGAC GTTCGAGATG
CAGCCCGATT ACGGCCGCAC GCAGAACGCT TCCAAGTAA
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| Protein sequence | MTIKFVAALA VSLATIAFQA RADVIKVGVI APMSGPFSAV GQTWEGATKA YQKLNGTTVG
KHTIEVIYRD LPEINPAQAK ALAQELIVKE GAQYIAGLYF TPDTLAVAAL AQEAKVPVVI
FNASTSSLLD KSDFLLRTSY TLPQMAVPVA KYALEKNVRN AVTLVSDFGP GLDAEKSFTT
AFVSGGGKLL EAIRAPLKTT DFGPLMQRVK ALKPDALYVF APGGPATYAM VKAYNEAGLR
AAGVRFLGTA ETDEDQLRAI GPDLLGIETG MFYSATHNSA LNNAVIKALG EVAPKAIPTV
QLANAYDGLH VIYHMVKATD GKRDGAKALA SAKGHSWESP RGPVKIDPAS REFVQNVYMR
VVEKDPSGRY VNREFRTFEM QPDYGRTQNA SK
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