| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4290 |
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| Symbol | |
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| ID | 7970477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4534124 |
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| End bp | 4535431 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644794876 |
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| Product | Rieske (2Fe-2S) domain protein |
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| Protein accession | YP_002946168 |
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| Protein GI | 239817258 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCAAT CGCAGGCGGT CATCGGCATC ACGAATGCCC GAAAGAACCC GCCCTTGGAA
CATTGCGTCT GGCCAGCGGA CGCCATGAAC AACATCCCGG ACTGGGTCTA CACCAGCCAG
GCGATCTATG ACCAGGAGAT CGAGCGCATC TTTCGCGGCG ACACCTGGAA TTTTGTCGCC
CTGGAAGCGG AGATCCCCAA CCCGGGCGAC TACAAGCGCG GCTATGTCGG CGCCACGGCC
GTCGTGATCG TGCGCGCGGA GGACCACACG ATCTCCGTCT TTGAGAACCG CTGCGCCCAT
CGCGGCGCGG AGTTCTGCCG CGCCAGCCAG GGCAATACGA AGGAGTTCGT CTGCCCCTAC
CACCAGTGGT CGTACGACCT CAAGGGAAAC CTGCAGGGCG TTCCGTTCAA GCGCGGCATC
AACAAGGTGG GCGGCATGCC AGCGGACTTC AAGAACGCCG ACCACGGCAC CCGCCAGTTG
CGTGTGGCCA CACGCAACGG CGTGGTGTTC GCCACCTACT CCGACAAGAC CCCGCCTCTG
GAAGAGTACA TGACCCAGGA GATCGTCGAG GAGTTCGACG TTCCCTTCTC GGGCAAGAAA
CTCAAGATCC TGGGCTATTG CCGCAACGAG CTTCCCTGCA ACTGGAAGAT GTACCACGAG
AACCTCAAGG ATCCGTACCA CGCAACGCTA CTGCATTCGT TTCTCGTGGT GTTTGGCCTT
CTCGTGCCTG GCATCAAGTC GATCGTGTTT GCAGACAAGG CGCATGGTCG CCATGGCTTC
ATGGCGTCGG CCAAGCCAGA CGAGATCTAT GCCACTGTCG CCGACGACGA CAAGGCGCAG
ATGCGATCCT TCAGCGACAA CCTCCGGTTG CGCGACGAAC GGTTCCTGGA CTATGTACGG
GAGTTCAAGT CGCCCTGGTC CGCCAACATG ATGACCATGT GGCCGAACCT CATCGTTCAG
CGCCAGATGA ACACGATGGG CGTGCGGCAG ATCATCCCTA ACGGTCCGAA CAGCATGGTG
ATGCAGTGGA CGATGTTCGG ATACGAGGAC GACACGCCGG AGATGACACG GCACCGCCTG
CGTCAGGGCA ACCTGATGGG CCCGGCCGGC TTCCTGGGCC TCGAGGACAA CGAGGCATTG
AAGTTCGTGC AGGAAGGCCT GCGCAACTCC TCCACGGACA ACAACGTCGT CAAGCTCGAT
GCAGGCCACC AGGGCACGGC ACGCAATCTC ATCTCCGAGT CCTGTATCCG CTCCCTCTAC
CAGTACTACC GGGACGTGAT GGACATCCGT GTTGCGGAGG AAGCATGA
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| Protein sequence | MYQSQAVIGI TNARKNPPLE HCVWPADAMN NIPDWVYTSQ AIYDQEIERI FRGDTWNFVA
LEAEIPNPGD YKRGYVGATA VVIVRAEDHT ISVFENRCAH RGAEFCRASQ GNTKEFVCPY
HQWSYDLKGN LQGVPFKRGI NKVGGMPADF KNADHGTRQL RVATRNGVVF ATYSDKTPPL
EEYMTQEIVE EFDVPFSGKK LKILGYCRNE LPCNWKMYHE NLKDPYHATL LHSFLVVFGL
LVPGIKSIVF ADKAHGRHGF MASAKPDEIY ATVADDDKAQ MRSFSDNLRL RDERFLDYVR
EFKSPWSANM MTMWPNLIVQ RQMNTMGVRQ IIPNGPNSMV MQWTMFGYED DTPEMTRHRL
RQGNLMGPAG FLGLEDNEAL KFVQEGLRNS STDNNVVKLD AGHQGTARNL ISESCIRSLY
QYYRDVMDIR VAEEA
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