| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4280 |
|---|
| Symbol | |
|---|
| ID | 7971364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4521909 |
|---|
| End bp | 4523228 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794867 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002946159 |
|---|
| Protein GI | 239817249 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGA CAACGACGGT ATCGGCGCCC GCGGCGACCG CCAATCCAGC CCACCAGCCC
ACCAAGGTGC GCTGGAAGAT CTTCCTGATG ATGTTGTTCC TGATCTCGAT CAACTACATC
GACCGCGCCT CGCTGTCGGT GGCCATGCCG CTGATCGCCA AGGAATTCGA CATCGGCCCC
GCGGTGCAGG GCCTGCTGCT CAGCTCCTTC TTCTGGACCT ATGCGCTGAT GCAGATTCCC
GGCGGCATGC TGGCCGACCG TTTCGGTCCG CGCGTCGTCA TCGCCGGCGC GACGCTGGGC
TGGGGCTTCT TCCAGGCGAT TGCCGCCGCC TGCACGGGCT GGGTTCCGCT GCTGCTGACC
CGCCTGGGGC TGGGGGCGGC CGAGGCGCCG ATCTACCCTG CGGGCGGCAA GCTCAACGGC
ATCTGGATGA CCCAGACCGA ACGGGGCCGC GGCGCCACCT TGCTCGATGG CGGCGCGCCG
CTGGGCGCGG CGCTCGGCGC GATCCTGATC TCGGGGCTGA TCGCCGTGCT CGGCTCCTGG
CGCATGGCGT TCGCCATTGC CGGCGGCGGG ACCGTGCTGG CCGGCTACTT CGCCTGGCGC
TACATCCGCA ACCATCCGCG CCAGCATCCC GGCGTGAACG AGGCCGAGGC GCGCTTCATC
GAGGCCAGCC ATGCGGCCGA CGCGGCCAAG GAATCGGCGG ACGCGAGCGG ACGGGTGCTC
GACTTCTTCC GCTTCCGCTC CGTGTGGGGC ATGTTCTTCG GCTGGATGTG CTTCAACGCG
CTGTTCTACG GCCTGCTCAC CTGGATGCCC AACTACCTGT CGAAGGTGCA CGGCTTCGAC
ATCAAGCAGA TGGGCGGCGC GGTGTTCATC ATGTTCTTCT CGGGCTTCGT GGGCGAGATG
TTCGGCGGCT GGCTGGCCGA CAAGTGGCAG GCGGCCGGCG CCTCGCAGAG CAAGGTGCTG
CGCACGCTGT TCGGCATCTC GTCGATCATC GCGACCATCG CCATCTTCAT GGTGACGCAG
ATCAAGGACC CGATCGCCGT GGTCGTGCTG CTGTCGGTGA CGCTGTTCTT CCTGCGCTGG
TGCGGCCTGT TCTGGTGCGT GCCCTCGATC CTCGGCACGC GCGCCCGGGT CGGCTTTCTC
GGCGGCACCA TGAACCTGGG CGGCAACGTG GCGGGCATCG GCGTGCCGAT CGTGGTGGGC
CTGATCGTGC AGGCCACCGG CTCGTACTTC ATGGCGCTGA TGCTGTTCAC GGCCGCGGGC
GCGGGCTTGT TCGTCTGCTC GACGATGCTG ATCGACTACA GCAAGAAGCT GCCGGTCTGA
|
|---|
| Protein sequence | MQSTTTVSAP AATANPAHQP TKVRWKIFLM MLFLISINYI DRASLSVAMP LIAKEFDIGP
AVQGLLLSSF FWTYALMQIP GGMLADRFGP RVVIAGATLG WGFFQAIAAA CTGWVPLLLT
RLGLGAAEAP IYPAGGKLNG IWMTQTERGR GATLLDGGAP LGAALGAILI SGLIAVLGSW
RMAFAIAGGG TVLAGYFAWR YIRNHPRQHP GVNEAEARFI EASHAADAAK ESADASGRVL
DFFRFRSVWG MFFGWMCFNA LFYGLLTWMP NYLSKVHGFD IKQMGGAVFI MFFSGFVGEM
FGGWLADKWQ AAGASQSKVL RTLFGISSII ATIAIFMVTQ IKDPIAVVVL LSVTLFFLRW
CGLFWCVPSI LGTRARVGFL GGTMNLGGNV AGIGVPIVVG LIVQATGSYF MALMLFTAAG
AGLFVCSTML IDYSKKLPV
|
|---|
| |