| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4255 |
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| Symbol | |
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| ID | 7971339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4497110 |
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| End bp | 4497790 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794842 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002946134 |
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| Protein GI | 239817224 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.969066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCA TCCTGCTGGC CGAAAAAGGC CGCGAGATGG CCGCCGCGCT GTGCGAAGGG
CTGCAGCGCG CCGGCCACGA CGTGGAGCAC ATCGCCGATG GCGCCGCGGT GCTCGACCGC
ATCCTCAGCT CGCCGCCGGC GCTCACGCTG CTCGACACCG CGCTGCCGCG CATCGGCGGC
CTCCGGGTGC TGGAGCAGGT GCGCTCGCAC AGCGACCATC CGATCATCGT TCTGACGGCC
CGCACGCGCG AGGCCGACCG CCTGCGCGGC CTGGACCTGG GCGCCGACGA CTACGTGTGC
AAGCCCTTCT CGCCGCGCGA AGTGGTGGCG CGCGTGAACA CGGTGCTGCG CCGCCATGCG
CAGCGCCAGC GCATCGCCAT GGCCTCGCCT TCGGTGGCGT TCGGCGGCAG CGCCCACAGC
GTGAGGATCG AGGGGCGGCT GCTCGCGCTC ACGGGCCGCG AGCTGAACCT GCTGCAGGCG
CTGTCACGCG AGCCGGGCCG GGTGTTTTCG CGCTCCGCGC TGCTCGAGGC GGCGTTTGCA
GATGCGCTCG ACGTGAACGA GCGCGCAGTC GACGGGCACA TCAAGAACCT GCGCAGGAAG
CTCGCCGCCG CATCGCCCGC GCACGACTGG ATCCGCTCGA TCTACGGGGT CGGCTTTGCC
TTCGAGGAGC GGCCGGCCTG A
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| Protein sequence | MSRILLAEKG REMAAALCEG LQRAGHDVEH IADGAAVLDR ILSSPPALTL LDTALPRIGG
LRVLEQVRSH SDHPIIVLTA RTREADRLRG LDLGADDYVC KPFSPREVVA RVNTVLRRHA
QRQRIAMASP SVAFGGSAHS VRIEGRLLAL TGRELNLLQA LSREPGRVFS RSALLEAAFA
DALDVNERAV DGHIKNLRRK LAAASPAHDW IRSIYGVGFA FEERPA
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