| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4254 |
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| Symbol | |
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| ID | 7971338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4494691 |
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| End bp | 4497093 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794841 |
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| Product | outer membrane protein assembly complex, YaeT protein |
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| Protein accession | YP_002946133 |
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| Protein GI | 239817223 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCCTT CCAAGCCCGC CTCCGTCCTT GCCGCCCTGC TCCTCTCGAT CGCCTGCGCG
CCCGCCTGGG CCGCCGATCC GTTCACCGTC GGGGACATCC GGCTCGAGGG CCTGCAGCGC
GTGGAGCCGG GAACGGTGTT TGCCACGCTC GGCATCAGGG CGGGCGACAC CTACAGCGAC
GAGCGCGGCA GCGCAGCCAT CCGCTCGCTG TTCGAGCTCG GCCTCTTCAA GGACGTGCGC
ATCGACATCA ATGGCAGCGT GCTGGTGGTG ATCGTCGAGG AACGCCCGTC GATTGCCGAC
GTCGACTTCG TCGGCACCAA GGAATTCGAC AAGGCCGCGC TCCAGAAGGC ACTGCGCAGC
GTGGGCCTGG CCGAAGGCCA GCCCTACGAC AAGGCGCTGG CCGACCGCGC GGAGCAGGAA
CTCAAGCGGC AGTACATCAG CCGGAGCCTC TACAGCGCGC AAGTCGTCAC CACCGTGACG
CCGCTGGAGC GCAACCGCGT CAACCTGACT TTCAGCGTGA CCGAGGGCGA GTCCGCGCGC
ATCAAGGAAG TGCGCGTGGT CGGCAACCAA GCCTTCGGCG AAAGCACCCT GCTCGATCTG
TTCGACCAGG ACAGCGGCGG CTGGCTGAGC TGGTACACCA AGTCGAACCA GTATTCGCGC
AGCAAGTTCA ACGGCGACCT GGAGACGCTG CGCTCCTTCT ACGTCACGCG CGGCTACCTG
GAGTTCCGTA TCGACTCCAC GCAGGTCGCC ATGTCGCCGG ACCGGGAGAC GCTCACGCTC
ACGGTCAACA TCACCGAAGG ACAGAAGTTC GCGGTGGCCG GCGTCAAGCT CGCGGGCAAC
TACCTGGGAC GCGAAGACGA GTTCAAGTCG CTCGTGACGA TCCGCCCCGG CCAGCCCTAC
AACGGCGAAG ACGTGAACGC CACCACCCGG GCCTTCACCG ACTATTTCGG CAGCTTCGGC
TATGCCTTCG CACGCGTCAA GGCAGAACCC GAGATCGACC GCGACAACAA CCGCGTCACG
CTGGTGCTGC GGGCCGAACC TTCACGGCGC GCCTACGTGC GGCGCCTGAA CATCGGGGGC
AACGCAAGAA CGCGCGACGA AGTCATCCGC CGCGAATTCC GGCAGTACGA GGGCGCCTGG
TACGACGGCA ACAAGATCAA GCTCTCGCGC GACCGCGTGG ACCGGCTCGG CTTCTTCACC
GACGTGAACA TCGAGACCAC CGAGGTGCCG GGCTCGCCCG ACCTGGTCGA CCTGGCGATC
AACGTGACCG AGAAGCCCAC CGGTTCGCTG CAGCTCGGCG CGGGCTACTC GTCGACCGAC
AAGGTGTCGC TGAGCTTCGG CATCACGCAG GAGAACGTGT TCGGCACGGG CAACTACCTG
GGCCTGCAGG TCAACACGAG CTCGTACAAC CGCACCATCT CCCTCACGGC CACCGACCCG
TACTTCACGC CGGGCGGCAT CTCGCGCACC TTCAATGTGT TCCACACCAC CACCCGCCCC
TACTACCAGG CAGACGGCAA CTACAAGCTC GCGAGCGATG GCGGCTCGGT GCGCTTCGGG
CTGCCGCTCG GGGAGCTGGA CACGGTCTAC CTGGGCATCG GCGTGGAGCG CTACAGCTTC
ACGCCGGGCA CCAACGGCGC CTACACGCTG GTCGACGGCT CCTACGTGTA CACGGGCACG
CCGCAGGCCT ACCTCGACTA CTTCCAGTGC ACGGGCACGG CGCCAAGCGT GGTGTGCGCA
TCGAGGAACA TGGTGGGCAT TCCCGCGACC ATCGGCTGGG CGCGCGACGA CCGCGACAGC
GCGCTGGTGC CCACCACCGG CCGGCTGCAG AGCGCCAACC TGGAGGTGGG CGTGGGCAGC
GAGCTGCGCT ACCTGAAGAG CACCTACCAG TACCAGCAGT ACTTCGCGCT GTCCAAGCAG
TACACGCTGG CCGTCAACGG CCAGCTCGGC TATGCCAAGG CGCTGGGCGG AACCGCGTAC
CCCATCTTCA AGAACTTCTA TGCGGGCGGG CTCGGCTCGA TCCGCGGCTT CGAGCAGAAC
TCGCTCGGGC CGGTCGATGC GGTCACGGGC GGTGCGCTCG GCGGCACGCG CAAGGCCATC
TTCAACATGG AGTTCAGCAC GCCCTTCCCG GGCGCGGGCA ACGACCGGTC GCTGCGGCTG
TACACCTTCT TCGATGCCGG CAACGTGTTT GCCGAGCGCA CCGCGAGCAT GACCGATGCG
CAGTGGAAGG CGCAGAACCG CCTGCGCGCC TCGGCCGGGG TGGGCATCAG CTGGATTTCC
CCGCTCGGCC CGCTGCGCCT GGCCTATGCG GTGCCGCTCG TGTACCAAAA GCTCGACGAA
GCCAACGGCA TTGCGGCGGA CCGGACGCAG CGCTTCCAGT TCCAGATCGG CACCTCGTTC
TGA
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| Protein sequence | MSPSKPASVL AALLLSIACA PAWAADPFTV GDIRLEGLQR VEPGTVFATL GIRAGDTYSD
ERGSAAIRSL FELGLFKDVR IDINGSVLVV IVEERPSIAD VDFVGTKEFD KAALQKALRS
VGLAEGQPYD KALADRAEQE LKRQYISRSL YSAQVVTTVT PLERNRVNLT FSVTEGESAR
IKEVRVVGNQ AFGESTLLDL FDQDSGGWLS WYTKSNQYSR SKFNGDLETL RSFYVTRGYL
EFRIDSTQVA MSPDRETLTL TVNITEGQKF AVAGVKLAGN YLGREDEFKS LVTIRPGQPY
NGEDVNATTR AFTDYFGSFG YAFARVKAEP EIDRDNNRVT LVLRAEPSRR AYVRRLNIGG
NARTRDEVIR REFRQYEGAW YDGNKIKLSR DRVDRLGFFT DVNIETTEVP GSPDLVDLAI
NVTEKPTGSL QLGAGYSSTD KVSLSFGITQ ENVFGTGNYL GLQVNTSSYN RTISLTATDP
YFTPGGISRT FNVFHTTTRP YYQADGNYKL ASDGGSVRFG LPLGELDTVY LGIGVERYSF
TPGTNGAYTL VDGSYVYTGT PQAYLDYFQC TGTAPSVVCA SRNMVGIPAT IGWARDDRDS
ALVPTTGRLQ SANLEVGVGS ELRYLKSTYQ YQQYFALSKQ YTLAVNGQLG YAKALGGTAY
PIFKNFYAGG LGSIRGFEQN SLGPVDAVTG GALGGTRKAI FNMEFSTPFP GAGNDRSLRL
YTFFDAGNVF AERTASMTDA QWKAQNRLRA SAGVGISWIS PLGPLRLAYA VPLVYQKLDE
ANGIAADRTQ RFQFQIGTSF
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