| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4239 |
|---|
| Symbol | |
|---|
| ID | 7971323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4481296 |
|---|
| End bp | 4484931 |
|---|
| Gene Length | 3636 bp |
|---|
| Protein Length | 1211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794826 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002946118 |
|---|
| Protein GI | 239817208 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCGAA ACGGTGTGAA CCCGGATGCC GCCACCCCCA GCCCCGACGA CGCGCCCCAG
CGCATCGTCA AGGTGCGGCG CGACTACAAC AGCTGGGTGG CGAGCGAGAC GCTCGAGGAC
TACGCGCTGC GCTACACGCC GCAGCGCTTT CGCAAGTGGT CTGAATGGCG CGTGGCCAAC
ACGGCCTTCG GCGCGGCTTC GTTCCTGGTG CTGGAGGCCG TGGGCGCGAC GCTGCTGGTG
CAGTACGGCT TCGCCAACGC GTTCTGGGCG ATCGTGGCGA CGGGGCTCAT CATCTTCCTG
GCGGGCCTGC CGATCAGCGT GTATGCCGCG CGCTACGGCG TCGACATGGA CCTGCTCACG
CGTGGCGCGG GCTTCGGCTA CATCGGCTCC ACGCTCACCT CGCTGATCTA CGCCTCGTTC
ACCTTCATCT TCTTCGCGCT CGAGGCGGCG GTGATGGCCT ATGCGCTCGA ACTCGCGCTG
GGCGTGCCGC CGGTGTGGGG CTACCTGGTG TGCGCGCTGG TGGTGATTCC GCTGGTGACG
CACGGCGTCT CGGCCATCAG CCGGCTGCAG CTGTGGACCC AGCCGCTCTG GCTGGTGATG
CTGGTGGTGC CCTTCGTCTT CGTGCTGGTG CGCGATCCTG GTGCGTTTGC TGGCATCGTG
CACTACAACG GTGTGAAGGC CGGCGCCAAG GGCTTCGACC TGCACCTGTT TGGCGCGGCG
CTGACCGTCG GCATCGCCTT GATCACCCAG ATGGGGGAGC AGGCCGACTA CCTGCGCTTC
ATGCCCGCGC GCACCGCCGC AGGCGCGCGG CGCTGGTGGG CCGGCGTACT GGCCGGCGGG
CCGGGCTGGG TGGTGCTGGG GGTGGTCAAG ATGCTGGGCG GCGCGCTGCT GGCCTACCTG
GCGATCACGC ACATGGTGCC GGCCGAGCGC GCGGTCGATC CCAACCAGAT GTACCTGGCG
GCCTACGAGT ACGTGTTTCC GAACTACGGC TGGGCGGTGG CCGCGACCGC GCTGTTCGTG
GTGATCTCGC AGCTCAAGAT CAACGTGACC AACGCCTATG CGGGCTCGCT GGCCTGGAGC
AATTTCTTCT CGCGCGTGGC GCACAGCCAT CCGGGGCGCG TGGTGTGGGT GGTGTTCAAC
GCGCTCATCG CCTTCATGCT GATGGAGATG AACGTGTTCG AGGCACTGGG CGACGTGCTC
GGCCTGTTCG CCAACATCGC CATCGCCTGG ATGATGGCGG TGGTGGCCGA CCTGGTCATC
AACAAGCCGC TGGGCCTGTC GCCGCCGGGC ATCGAGTTCA AGCGGGCGCA CCTGTGGGAC
ATCAACCCGG TGGGCGTCGG CGCGATGGCG CTGGCCTCGG TGCTGTCGAT CACCGCGCAC
CTGGGCGTGT TCGGGCCGCT CGCGCAGGCT TTTTCGGCGC TGATTGCGCT GGGCACGGCG
CTGGTGGTGT CGCCGCTGCT GGCCTGGGCC ACGGGCGGCA AGTACTACCT GGCGCGGGGC
TCGGCCGGCC AGGGCGCGGT TGCCTTCGCC CCGGCCGCGG GCCCGCGCGC GGTGCGCTGG
GCGCGGGTCG AGCATGCCGT GGACGAGGGC GGCGCGCAGG GCAGCTACCA GCGCCTCAAG
GTGCAGCATT GCGTGATCTG CGAGCGTGAG TACGAAGGCC CCGACATGGC CCACTGTCCG
GCCTACCAGG GCGCGATCTG CTCGCTGTGC TGCACGCTCG ACGCGCGCTG CGGCGACCTG
TGCAAGCCGC ATGCGAGCCT GTCGGCGCAA TGGTCCTCGG TGCTGCGCTG GCTGCTGCCG
CGCTTCAGCT GGCGCTATCT CGACACCGGC CTCGGGCACT TCCTGCTGCT GATGCTGATC
ATCGTGCCGG TGCTGGCGGT GGTGTTCGGC GTGCTCTACC AGCAGGAGCT GCGCGCATTG
GGCGAGAGCG CGCTGCAGCT GGCCTCGCAA TCGGAACTGG CCGAGGCACT GGCCGGCGTG
CAGCAGTCGG CACTGCGCTC GGGCTTTCTC AAGGCCTACA TGGCGCTGCT CGTGATTGCG
GGCGTGGTGG CCTGGTGGCT GGTGCTGGCG CACCAGAGCC GCAAGGTCGC GCAGGAGGAA
TCGAACCGCC AGACCCATCT GCTGATGCGC GAGATCGAAC TGCACCGCGC GACCGACCGC
GCCTTGCAGT CGGCCAAGCA GACGGCGGAG GAAGCGCGCG AAGTCGCCGA GCAGGCCAAG
CTCGCGGCCG ACGAGGCCCG CCGCGCCGCC GACCAGGCCA ACCAGGCCAA GAGCCGCTAC
ATCAGTGCCA TCAGCCACGA GCTGCGCACG CCGCTCAACA GCATCCTGGG CTACGCGCAG
CTGATGGGCG AGGACCACTC CGTACCGCCG CACCGCCAGC AGGCCGTGGC GGTGATCAAG
CGCGGCGGCG AGCACCTGCT GTCGCTCATC GAGGGCACGC TGGCCATTGC CCACATCGAG
GCCGGCAAGC TCACGCTGCA TGCCAGGCCC ATGCGCTTTG CCGACACGCT GCGCGAGCTG
GCCGACATGT TCGAGCTGCA GGCGGCCGAG AAGGGCCTGC GGTTCCGCTT CGAGACCACC
GGCAGCTTGC CCGAGGTGGT GCGCGCCGAC GAGAAGCGCG TGTGCCAGAT CCTCATCAAC
CTGCTGGGCA ATGCCATCAA GTTCACGGCC GTGGGCGAGG TGAGGCTGCG GCTGTCGTAT
GCGCGCGAAT TCGCCTCGGT CGAGATCGAG GACACCGGCC CCGGCATGAC GGCCGAGGAC
ATCGAGCGCA TCTTCGAGCC CTTCACGCGC GGCGATGCGG CTGCGGCTGC GGCTGCGACG
CCCGGCGCGG GGCTGGGCCT CACCATCGCC AAGATGCTGA CCGACCTGAT GGGCGGCGAG
ATGAAGGTGC GCAGCACGCC CGGCGAAGGC TCGCTCTTCT GCGTGCGGCT CTTCCTGCCG
CGCGTGCACG ACGCGGCCGG CGCCTCGGGC CGCCCGGCGC CAGTGCAGCC TGCGCGGCGC
GGCTACGAAG GCCCGCGCCG GCGGCTGCTG GTGGTCGACA ACGAGGAGGC CGACCGCGAG
CTGCTCGGCC ATGTGCTGGC GCCGCTCGGC TTCGAGCTGC GCAGCGCCGC CAGCGGGCAC
GATGCGCTCG ACCTCATTGC GGCCGGCTAC CGGCCCGACG CGATGTTCGT CGACCTTGCC
ATGCCCGGCA TCGATGGCTG GGAGACCATC CGCCGCGCGC GCAGGCTCGG CCTGGCCGAT
GCCAGCGTGG CCATCGTCTC GGCCAATGCC TTCGACAAGG GCCTGGAGAA CGACGTGGGC
ATTGCACCGG AAGATTTCTT CGTCAAGCCG GTGCGCCACA CGGAACTGCT CGACTGGCTC
GAGCGCCGCC TCGGCCTGCG ATGGACCGAC ACCGCCGCGA CGCCGGTGCC CGCCGCCGCG
CCGCGCACCA TGCGGGCGCC GTCGCTTTCG AGGCTGCGCG CACTCGACGA GGCGGTGAGC
CTGGGCTACT TTCGCGGCAT CATGAACCAG CTCGACGAGA TCGACGCCGA AGAGCCCGAA
TGCCTGGCCT GGACCGAGGC GCAGCGCGTC CTGGCGCGCC AGTTCCAGTT CGAGGCCATG
AGCCGGGCGC TGGCGGCCGC CGTCGGCGCG GACTGA
|
|---|
| Protein sequence | MHRNGVNPDA ATPSPDDAPQ RIVKVRRDYN SWVASETLED YALRYTPQRF RKWSEWRVAN
TAFGAASFLV LEAVGATLLV QYGFANAFWA IVATGLIIFL AGLPISVYAA RYGVDMDLLT
RGAGFGYIGS TLTSLIYASF TFIFFALEAA VMAYALELAL GVPPVWGYLV CALVVIPLVT
HGVSAISRLQ LWTQPLWLVM LVVPFVFVLV RDPGAFAGIV HYNGVKAGAK GFDLHLFGAA
LTVGIALITQ MGEQADYLRF MPARTAAGAR RWWAGVLAGG PGWVVLGVVK MLGGALLAYL
AITHMVPAER AVDPNQMYLA AYEYVFPNYG WAVAATALFV VISQLKINVT NAYAGSLAWS
NFFSRVAHSH PGRVVWVVFN ALIAFMLMEM NVFEALGDVL GLFANIAIAW MMAVVADLVI
NKPLGLSPPG IEFKRAHLWD INPVGVGAMA LASVLSITAH LGVFGPLAQA FSALIALGTA
LVVSPLLAWA TGGKYYLARG SAGQGAVAFA PAAGPRAVRW ARVEHAVDEG GAQGSYQRLK
VQHCVICERE YEGPDMAHCP AYQGAICSLC CTLDARCGDL CKPHASLSAQ WSSVLRWLLP
RFSWRYLDTG LGHFLLLMLI IVPVLAVVFG VLYQQELRAL GESALQLASQ SELAEALAGV
QQSALRSGFL KAYMALLVIA GVVAWWLVLA HQSRKVAQEE SNRQTHLLMR EIELHRATDR
ALQSAKQTAE EAREVAEQAK LAADEARRAA DQANQAKSRY ISAISHELRT PLNSILGYAQ
LMGEDHSVPP HRQQAVAVIK RGGEHLLSLI EGTLAIAHIE AGKLTLHARP MRFADTLREL
ADMFELQAAE KGLRFRFETT GSLPEVVRAD EKRVCQILIN LLGNAIKFTA VGEVRLRLSY
AREFASVEIE DTGPGMTAED IERIFEPFTR GDAAAAAAAT PGAGLGLTIA KMLTDLMGGE
MKVRSTPGEG SLFCVRLFLP RVHDAAGASG RPAPVQPARR GYEGPRRRLL VVDNEEADRE
LLGHVLAPLG FELRSAASGH DALDLIAAGY RPDAMFVDLA MPGIDGWETI RRARRLGLAD
ASVAIVSANA FDKGLENDVG IAPEDFFVKP VRHTELLDWL ERRLGLRWTD TAATPVPAAA
PRTMRAPSLS RLRALDEAVS LGYFRGIMNQ LDEIDAEEPE CLAWTEAQRV LARQFQFEAM
SRALAAAVGA D
|
|---|
| |