Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4239 |
Symbol | |
ID | 7971323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4481296 |
End bp | 4484931 |
Gene Length | 3636 bp |
Protein Length | 1211 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794826 |
Product | histidine kinase |
Protein accession | YP_002946118 |
Protein GI | 239817208 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACCGAA ACGGTGTGAA CCCGGATGCC GCCACCCCCA GCCCCGACGA CGCGCCCCAG CGCATCGTCA AGGTGCGGCG CGACTACAAC AGCTGGGTGG CGAGCGAGAC GCTCGAGGAC TACGCGCTGC GCTACACGCC GCAGCGCTTT CGCAAGTGGT CTGAATGGCG CGTGGCCAAC ACGGCCTTCG GCGCGGCTTC GTTCCTGGTG CTGGAGGCCG TGGGCGCGAC GCTGCTGGTG CAGTACGGCT TCGCCAACGC GTTCTGGGCG ATCGTGGCGA CGGGGCTCAT CATCTTCCTG GCGGGCCTGC CGATCAGCGT GTATGCCGCG CGCTACGGCG TCGACATGGA CCTGCTCACG CGTGGCGCGG GCTTCGGCTA CATCGGCTCC ACGCTCACCT CGCTGATCTA CGCCTCGTTC ACCTTCATCT TCTTCGCGCT CGAGGCGGCG GTGATGGCCT ATGCGCTCGA ACTCGCGCTG GGCGTGCCGC CGGTGTGGGG CTACCTGGTG TGCGCGCTGG TGGTGATTCC GCTGGTGACG CACGGCGTCT CGGCCATCAG CCGGCTGCAG CTGTGGACCC AGCCGCTCTG GCTGGTGATG CTGGTGGTGC CCTTCGTCTT CGTGCTGGTG CGCGATCCTG GTGCGTTTGC TGGCATCGTG CACTACAACG GTGTGAAGGC CGGCGCCAAG GGCTTCGACC TGCACCTGTT TGGCGCGGCG CTGACCGTCG GCATCGCCTT GATCACCCAG ATGGGGGAGC AGGCCGACTA CCTGCGCTTC ATGCCCGCGC GCACCGCCGC AGGCGCGCGG CGCTGGTGGG CCGGCGTACT GGCCGGCGGG CCGGGCTGGG TGGTGCTGGG GGTGGTCAAG ATGCTGGGCG GCGCGCTGCT GGCCTACCTG GCGATCACGC ACATGGTGCC GGCCGAGCGC GCGGTCGATC CCAACCAGAT GTACCTGGCG GCCTACGAGT ACGTGTTTCC GAACTACGGC TGGGCGGTGG CCGCGACCGC GCTGTTCGTG GTGATCTCGC AGCTCAAGAT CAACGTGACC AACGCCTATG CGGGCTCGCT GGCCTGGAGC AATTTCTTCT CGCGCGTGGC GCACAGCCAT CCGGGGCGCG TGGTGTGGGT GGTGTTCAAC GCGCTCATCG CCTTCATGCT GATGGAGATG AACGTGTTCG AGGCACTGGG CGACGTGCTC GGCCTGTTCG CCAACATCGC CATCGCCTGG ATGATGGCGG TGGTGGCCGA CCTGGTCATC AACAAGCCGC TGGGCCTGTC GCCGCCGGGC ATCGAGTTCA AGCGGGCGCA CCTGTGGGAC ATCAACCCGG TGGGCGTCGG CGCGATGGCG CTGGCCTCGG TGCTGTCGAT CACCGCGCAC CTGGGCGTGT TCGGGCCGCT CGCGCAGGCT TTTTCGGCGC TGATTGCGCT GGGCACGGCG CTGGTGGTGT CGCCGCTGCT GGCCTGGGCC ACGGGCGGCA AGTACTACCT GGCGCGGGGC TCGGCCGGCC AGGGCGCGGT TGCCTTCGCC CCGGCCGCGG GCCCGCGCGC GGTGCGCTGG GCGCGGGTCG AGCATGCCGT GGACGAGGGC GGCGCGCAGG GCAGCTACCA GCGCCTCAAG GTGCAGCATT GCGTGATCTG CGAGCGTGAG TACGAAGGCC CCGACATGGC CCACTGTCCG GCCTACCAGG GCGCGATCTG CTCGCTGTGC TGCACGCTCG ACGCGCGCTG CGGCGACCTG TGCAAGCCGC ATGCGAGCCT GTCGGCGCAA TGGTCCTCGG TGCTGCGCTG GCTGCTGCCG CGCTTCAGCT GGCGCTATCT CGACACCGGC CTCGGGCACT TCCTGCTGCT GATGCTGATC ATCGTGCCGG TGCTGGCGGT GGTGTTCGGC GTGCTCTACC AGCAGGAGCT GCGCGCATTG GGCGAGAGCG CGCTGCAGCT GGCCTCGCAA TCGGAACTGG CCGAGGCACT GGCCGGCGTG CAGCAGTCGG CACTGCGCTC GGGCTTTCTC AAGGCCTACA TGGCGCTGCT CGTGATTGCG GGCGTGGTGG CCTGGTGGCT GGTGCTGGCG CACCAGAGCC GCAAGGTCGC GCAGGAGGAA TCGAACCGCC AGACCCATCT GCTGATGCGC GAGATCGAAC TGCACCGCGC GACCGACCGC GCCTTGCAGT CGGCCAAGCA GACGGCGGAG GAAGCGCGCG AAGTCGCCGA GCAGGCCAAG CTCGCGGCCG ACGAGGCCCG CCGCGCCGCC GACCAGGCCA ACCAGGCCAA GAGCCGCTAC ATCAGTGCCA TCAGCCACGA GCTGCGCACG CCGCTCAACA GCATCCTGGG CTACGCGCAG CTGATGGGCG AGGACCACTC CGTACCGCCG CACCGCCAGC AGGCCGTGGC GGTGATCAAG CGCGGCGGCG AGCACCTGCT GTCGCTCATC GAGGGCACGC TGGCCATTGC CCACATCGAG GCCGGCAAGC TCACGCTGCA TGCCAGGCCC ATGCGCTTTG CCGACACGCT GCGCGAGCTG GCCGACATGT TCGAGCTGCA GGCGGCCGAG AAGGGCCTGC GGTTCCGCTT CGAGACCACC GGCAGCTTGC CCGAGGTGGT GCGCGCCGAC GAGAAGCGCG TGTGCCAGAT CCTCATCAAC CTGCTGGGCA ATGCCATCAA GTTCACGGCC GTGGGCGAGG TGAGGCTGCG GCTGTCGTAT GCGCGCGAAT TCGCCTCGGT CGAGATCGAG GACACCGGCC CCGGCATGAC GGCCGAGGAC ATCGAGCGCA TCTTCGAGCC CTTCACGCGC GGCGATGCGG CTGCGGCTGC GGCTGCGACG CCCGGCGCGG GGCTGGGCCT CACCATCGCC AAGATGCTGA CCGACCTGAT GGGCGGCGAG ATGAAGGTGC GCAGCACGCC CGGCGAAGGC TCGCTCTTCT GCGTGCGGCT CTTCCTGCCG CGCGTGCACG ACGCGGCCGG CGCCTCGGGC CGCCCGGCGC CAGTGCAGCC TGCGCGGCGC GGCTACGAAG GCCCGCGCCG GCGGCTGCTG GTGGTCGACA ACGAGGAGGC CGACCGCGAG CTGCTCGGCC ATGTGCTGGC GCCGCTCGGC TTCGAGCTGC GCAGCGCCGC CAGCGGGCAC GATGCGCTCG ACCTCATTGC GGCCGGCTAC CGGCCCGACG CGATGTTCGT CGACCTTGCC ATGCCCGGCA TCGATGGCTG GGAGACCATC CGCCGCGCGC GCAGGCTCGG CCTGGCCGAT GCCAGCGTGG CCATCGTCTC GGCCAATGCC TTCGACAAGG GCCTGGAGAA CGACGTGGGC ATTGCACCGG AAGATTTCTT CGTCAAGCCG GTGCGCCACA CGGAACTGCT CGACTGGCTC GAGCGCCGCC TCGGCCTGCG ATGGACCGAC ACCGCCGCGA CGCCGGTGCC CGCCGCCGCG CCGCGCACCA TGCGGGCGCC GTCGCTTTCG AGGCTGCGCG CACTCGACGA GGCGGTGAGC CTGGGCTACT TTCGCGGCAT CATGAACCAG CTCGACGAGA TCGACGCCGA AGAGCCCGAA TGCCTGGCCT GGACCGAGGC GCAGCGCGTC CTGGCGCGCC AGTTCCAGTT CGAGGCCATG AGCCGGGCGC TGGCGGCCGC CGTCGGCGCG GACTGA
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Protein sequence | MHRNGVNPDA ATPSPDDAPQ RIVKVRRDYN SWVASETLED YALRYTPQRF RKWSEWRVAN TAFGAASFLV LEAVGATLLV QYGFANAFWA IVATGLIIFL AGLPISVYAA RYGVDMDLLT RGAGFGYIGS TLTSLIYASF TFIFFALEAA VMAYALELAL GVPPVWGYLV CALVVIPLVT HGVSAISRLQ LWTQPLWLVM LVVPFVFVLV RDPGAFAGIV HYNGVKAGAK GFDLHLFGAA LTVGIALITQ MGEQADYLRF MPARTAAGAR RWWAGVLAGG PGWVVLGVVK MLGGALLAYL AITHMVPAER AVDPNQMYLA AYEYVFPNYG WAVAATALFV VISQLKINVT NAYAGSLAWS NFFSRVAHSH PGRVVWVVFN ALIAFMLMEM NVFEALGDVL GLFANIAIAW MMAVVADLVI NKPLGLSPPG IEFKRAHLWD INPVGVGAMA LASVLSITAH LGVFGPLAQA FSALIALGTA LVVSPLLAWA TGGKYYLARG SAGQGAVAFA PAAGPRAVRW ARVEHAVDEG GAQGSYQRLK VQHCVICERE YEGPDMAHCP AYQGAICSLC CTLDARCGDL CKPHASLSAQ WSSVLRWLLP RFSWRYLDTG LGHFLLLMLI IVPVLAVVFG VLYQQELRAL GESALQLASQ SELAEALAGV QQSALRSGFL KAYMALLVIA GVVAWWLVLA HQSRKVAQEE SNRQTHLLMR EIELHRATDR ALQSAKQTAE EAREVAEQAK LAADEARRAA DQANQAKSRY ISAISHELRT PLNSILGYAQ LMGEDHSVPP HRQQAVAVIK RGGEHLLSLI EGTLAIAHIE AGKLTLHARP MRFADTLREL ADMFELQAAE KGLRFRFETT GSLPEVVRAD EKRVCQILIN LLGNAIKFTA VGEVRLRLSY AREFASVEIE DTGPGMTAED IERIFEPFTR GDAAAAAAAT PGAGLGLTIA KMLTDLMGGE MKVRSTPGEG SLFCVRLFLP RVHDAAGASG RPAPVQPARR GYEGPRRRLL VVDNEEADRE LLGHVLAPLG FELRSAASGH DALDLIAAGY RPDAMFVDLA MPGIDGWETI RRARRLGLAD ASVAIVSANA FDKGLENDVG IAPEDFFVKP VRHTELLDWL ERRLGLRWTD TAATPVPAAA PRTMRAPSLS RLRALDEAVS LGYFRGIMNQ LDEIDAEEPE CLAWTEAQRV LARQFQFEAM SRALAAAVGA D
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