| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4232 |
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| Symbol | |
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| ID | 7971316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4472813 |
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| End bp | 4475605 |
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| Gene Length | 2793 bp |
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| Protein Length | 930 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794819 |
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| Product | preprotein translocase subunit SecA |
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| Protein accession | YP_002946111 |
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| Protein GI | 239817201 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.41363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACCA ACTTCCTGAC CCAGATTTTC GGCAGTCGCA ACGACCGGCT CCTCAAGCAG
TATCGCAAGA CGGTGGAGCG CATCAATGCA CTCGAACCCG AATTCGAGAA GCTCAGCGAC
GATGGGCTGC GCGCCAAGAC CCAGGAGTTC AAGGACCGCA TCGCCAAGGG CGAAACCCTC
GACGACCTGC TGCCCGAAGC ATTCGCCACC GTGCGCGAAG GCTCCAAGCG CGTCATGAAG
ATGCGCCACT TCGACGTGCA GCTGCTCGGC GGCATGGCCC TTCACAACGG CAAGATCGCC
GAAATGCGCA CCGGCGAGGG CAAGACCCTC ACGGCCACGC TGCCGGTCTA CCTGAACGCG
CTGTCCGGCA AGGGCGTGCA CGTGGTCACG GTGAACGACT ACCTGGCCAA CCGCGACGCC
CAGTGGATGG GCCGCCTGTA CAACTTCCTG GGCCTCACGG TGGGCATCAA CCTGCCGCAG
ATGCCGCGCG AGGAAAAGCA GCAGGCCTAC GGCAGCGACA TCACCTACGG CACCAACAAC
GAGTACGGCT TCGACTACCT GCGCGACAAC ATGGTGTACG AGCCCGGCGA CCGGGTGCAG
CGCATGCTGA ACTACGCCAT CGTCGACGAG GTGGACTCCA TCCTGATCGA CGAGGCCCGC
ACGCCGCTGA TCATCAGCGG CCAGGCCGAA GACCACACCG ACCTCTACCT GGCCATCAAC
AAGGTGGTGC CGCTCCTGAC CAAGCAGGAA GGCGAGGCCG ATCCGCGCAC GGGCGAGGGC
GTCACGGTGC CGGGCGACTT CACGGTCGAC GAAAAGACCC ACCAGGTCTT CCTGACCGAA
GACGGCCACG AGAAGGCCGA GCAGCTGCTG GGCGAATTCA AGTTGCTGCC CGAAGGCGCG
TCGCTCTACG ACCCGGCCAA CATCACGCTG ATGCACCACC TGAACGCCGC GCTGCGTGCA
CGGCACCTGT ACCACCGCGA CCAGCACTAC GTGGTGCAGC AGGGCGAAGT CGTCATCGTC
GACGAATTCA CCGGCCGCCT CATGACGGGC CGCCGCTGGA GCGACGGCCT GCACCAGGCC
GTGGAAGCCA AGGAAGGCGT GCAGATCCAG GCCGAGAACC AGACGCTGGC CTCCATCACT
TTCCAGAACT ACTTCCGCCT GTACGGCAAG CTGGCCGGCA TGACCGGCAC GGCCGACACC
GAAGCCTACG AGTTCCAGGA AATCTACGGC CTCGAAACCG TCATCATTCC GCCGAACCGC
CTCAGCAAGC GCGACGACCA GCTCGACCGT GTCTACAAGA CCACGCGCGA GAAGTACGAG
GCGGCCATCC AGGACATCCG CGAATGCTAC GAGCGCGGCC AGCCCGTGCT GGTGGGCACC
TCGTCGATCG AGAACTCCGA AATCATCGAC GGCCTGCTCA CCCAGGCGGG CCTGCCGCAC
CAGGTGCTCA ACGCCAAGCA GCATGCGCGC GAAGCCGACA TCGTGGCGCA GGCCGGCCGC
ACCAAGATGA TCACCATCGC GACCAACATG GCCGGCCGCG GCACCGACAT CGTGCTGGGC
GGCAACATCG AGAAGATGAT CGAGGCCATC GAGAACGACG AAGGCCGCGA CGAAGCCACC
AAGGCAGCCG ACATCGCGCA CGTGCGCGAC GAATGGACCC GGGACCACGA GTTCGTCAAG
TCGCTGGGCG GCCTGCGCAT CATCGCGACC GAGCGCCATG AGTCGCGCCG CATCGACAAC
CAGCTGCGCG GGCGTTCGGG CCGCCAGGGC GACCCGGGCT CCTCGCGCTT CTACCTGAGC
CTGGACGATC CGCTGATGCG CATCTTCGCG GGCGACCGCG TCAAGGCGAT CATGGACCGC
CTCAAGATGC CCGACGGCGA GGCCATCGAA GCGGGCATCG TCACGCGCAG CATCGAGAGC
GCGCAGCGCA AGGTCGAGGC GCGCAACTTC GACATCCGCA AGCAGCTGCT CGAGTACGAC
GACGTCTCGA ACGATCAGCG CAAGGTGATC TACCAGCAGC GCAACGACAT CCTCGACGCG
GCCGACCTCT CGGCGCAGAT CGCGGCGCTG CGCGAAGGCT GCTTCACCGA CCTCGTGCGC
CAGTACGTGC CGGCCGAGTC GGTCGAGGAG CAGTGGGACC TGCAGGGCCT GGAGAAGACG
CTTTCCAATG AATGGGGCAT CGACATGCCC CTGAAGCAGC AGGTCGAGGC GGCCGAGGCC
GTGAGCGACG AGGACATCGT CGACATGGTG GTGAAGGCCG CCAACGACAG CTTCGATGCC
AAGGTGGCGC TGATCGGCCA GGAGAACTTC ACCCAGTTCG AACGCATGGT GCTGCTGCAG
AGCATCGACA CGCACTGGCG CGAGCACCTG GCCTCGCTCG ACTACCTGCG CCAGGGCATC
CACCTGCGCG GCTATGCGCA GAAGCAGCCC AAGCAGGAAT ACAAGCGCGA GGCCTTCGAG
CTCTTCGGCC AGCTGCTCGA CTCGGTCAAG AACGAAGTCA CGCGCCAGCT CATGACGGTG
CGCGTGCAGT CGGGCGAGCA GCTCGAGGAA GCCGCCGATG CGCTCGAGAG CCGCGGCGAG
AACGTCTCGA ACATCACCTA CAGCGCGCCC ACCGAGACCG GCGAGGTCGA GGTGCGCCTG
GATGAGGAAA ACCAGCGCCG CATCGCGGCC GCGGGACTGG GGCTGGGCAC GCTCGGCGCC
GAGGCCGCAG CCTTCGCGCG CGTCGGCCGC AACGATCCCT GCCCCTGCGG CAGCGGCAAG
AAGTACAAGC ACTGCCACGG CAAGCTCAGC TGA
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| Protein sequence | MATNFLTQIF GSRNDRLLKQ YRKTVERINA LEPEFEKLSD DGLRAKTQEF KDRIAKGETL
DDLLPEAFAT VREGSKRVMK MRHFDVQLLG GMALHNGKIA EMRTGEGKTL TATLPVYLNA
LSGKGVHVVT VNDYLANRDA QWMGRLYNFL GLTVGINLPQ MPREEKQQAY GSDITYGTNN
EYGFDYLRDN MVYEPGDRVQ RMLNYAIVDE VDSILIDEAR TPLIISGQAE DHTDLYLAIN
KVVPLLTKQE GEADPRTGEG VTVPGDFTVD EKTHQVFLTE DGHEKAEQLL GEFKLLPEGA
SLYDPANITL MHHLNAALRA RHLYHRDQHY VVQQGEVVIV DEFTGRLMTG RRWSDGLHQA
VEAKEGVQIQ AENQTLASIT FQNYFRLYGK LAGMTGTADT EAYEFQEIYG LETVIIPPNR
LSKRDDQLDR VYKTTREKYE AAIQDIRECY ERGQPVLVGT SSIENSEIID GLLTQAGLPH
QVLNAKQHAR EADIVAQAGR TKMITIATNM AGRGTDIVLG GNIEKMIEAI ENDEGRDEAT
KAADIAHVRD EWTRDHEFVK SLGGLRIIAT ERHESRRIDN QLRGRSGRQG DPGSSRFYLS
LDDPLMRIFA GDRVKAIMDR LKMPDGEAIE AGIVTRSIES AQRKVEARNF DIRKQLLEYD
DVSNDQRKVI YQQRNDILDA ADLSAQIAAL REGCFTDLVR QYVPAESVEE QWDLQGLEKT
LSNEWGIDMP LKQQVEAAEA VSDEDIVDMV VKAANDSFDA KVALIGQENF TQFERMVLLQ
SIDTHWREHL ASLDYLRQGI HLRGYAQKQP KQEYKREAFE LFGQLLDSVK NEVTRQLMTV
RVQSGEQLEE AADALESRGE NVSNITYSAP TETGEVEVRL DEENQRRIAA AGLGLGTLGA
EAAAFARVGR NDPCPCGSGK KYKHCHGKLS
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