Gene Vapar_4230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4230 
Symbol 
ID7971314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4470681 
End bp4471556 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content67% 
IMG OID644794817 
Productprotein of unknown function DUF815 
Protein accessionYP_002946109 
Protein GI239817199 
COG category[R] General function prediction only 
COG ID[COG2607] Predicted ATPase (AAA+ superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0216148 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC AGTTCCAGAA GCTGATCGAG CGCGCCGAGC AGCTGATCGG CCGCATCGAG 
TCGATCCTGC CGCAGCCGCT CGCGGCCCCC GCCGACTGGA ACGCGTCGAT CGCCTGGCGC
TACCGCCGCC GCAGCTCGGG CCATGGCGTG CTCGAGCCCG TCAGGCACGT GGCCGCCATG
GCGCTCGACA GCCTGAAGGA AATCGACGTC CAGAAGGAAA AGATCGAGCG CAACACGCGC
CAGTTCGTCG AGGGCAAGCC GGCCAACAAC GTGCTGCTGA CCGGCGCGCG CGGCACGGGC
AAGTCGTCGC TGATCCGCGC CTGCCTGCAG GCCTATGCGC CGCAGGGGCT GCGCTTGATC
GAGGTCGACA AGGCTGAACT CACCGACCTG CCCGACATCG TCGAGGTGGT GTCGCAGCGG
CCCGAGAAAT TCATCGTGTT CAGCGACGAC CTGAGCTTCG ACGAGGGCGA GCCGGGCTAC
AAGGCGCTCA AGTCCATTCT CGACGGCTCG ATCGCCGCGG CCACGCCCAA CGTGCTGATC
TACGCGACCA GCAACCGGCG CCACCTGCTG CCCGAGTACA TGAAGGACAA CCTCAGCTAC
ACCCACACCG AGGACGGCGA AGTCCATCCC GGCGAGGTGA TCGAGGAAAA GATCTCGCTG
TCGGAGCGCT TTGGCCTGTG GGTCAGCTTC TATCCGTTCA GCCAGAACGA ATACCTGGCC
ATCGTCGCGC AGTGGCTGTC GTCGTTCGGC GTCGACGCCG CCGCCATCGA GGCGGCGCGG
CCCGAGGCGC TGGTCTGGGC GCTCGAGCGC GGATCGCGCA GCGGCCGCGT GGCCTACCAG
TTCGCGCGTG ACTACGCCGG GCGGGCGACG GCATGA
 
Protein sequence
MNEQFQKLIE RAEQLIGRIE SILPQPLAAP ADWNASIAWR YRRRSSGHGV LEPVRHVAAM 
ALDSLKEIDV QKEKIERNTR QFVEGKPANN VLLTGARGTG KSSLIRACLQ AYAPQGLRLI
EVDKAELTDL PDIVEVVSQR PEKFIVFSDD LSFDEGEPGY KALKSILDGS IAAATPNVLI
YATSNRRHLL PEYMKDNLSY THTEDGEVHP GEVIEEKISL SERFGLWVSF YPFSQNEYLA
IVAQWLSSFG VDAAAIEAAR PEALVWALER GSRSGRVAYQ FARDYAGRAT A