Gene Vapar_4228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4228 
Symbol 
ID7971312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4468215 
End bp4470170 
Gene Length1956 bp 
Protein Length651 aa 
Translation table11 
GC content69% 
IMG OID644794815 
Productacyltransferase 3 
Protein accessionYP_002946107 
Protein GI239817197 
COG category[I] Lipid transport and metabolism 
COG ID[COG1835] Predicted acyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0660245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCACC CCAAGTACCG CCCCGACATC GACGGCCTGC GCGCCGTGGC GGTGGCCTCG 
GTGCTGGCCT TCCATGCGTT TCCCGATGCA TTGCCGGGGG GCTTCATCGG GGTCGACATC
TTCTTCGTGA TCTCGGGCTT CCTGATCACG ACCATCATCA TGCAGAGCCA CGCGGCCGGC
GACTTCAGCT ACCGCGACTT CTACGCGCGG CGCATCCGGC GGATCTTTCC GGCGCTCACG
CTGGTGCTGC TGGCCACGCT CGCCTTCGGC TGGTATGCGC TGCTGCCCAG GGAGTTCACC
GAACTCGGCA AGCAGGCAGC GGGCGGCGCG GCCTTCATCG CCAATTTCGT CTTCTGGGGC
GAGGCCGGGT ACTTCGACAC GGCCGCCGAG ACCAAGCCGC TGCTGCACCT GTGGTCGCTG
GGCATCGAGG AGCAGTTCTA CATCTTCTGG CCCATGCTGC TCGCGCTGGC CTGGCGCCGG
CGCTGGCCCA TTCTTCGGCT GCTGTGGGTG CTCGCGGCGG TGTCGTTCCT GGTCAACGTG
CTGACCATCC ACCCTTACCG CACGGCGGCC TTCTACTCGC CCGCTTCGCG CTTCTGGGAG
CTGATGGTGG GCGGCATCCT GGCCTGCATG CGCCTCAAGG CCGCGGGCAA GGCGCCGGCG
CCGGCCTGGC GCAGCCACCT GCAGTCCTGC CTGGGCGTGG GGCTGATCGT GCTCGGGCTC
GTGATGACCC GCAGCGACAA GGCCTTTCCA GGCTGGTGGG CGCTGCTGCC CACGCTGGGC
GCGGCAAGCT GCATCGCGGC CGGGCCTGCG GGCCTGCTCA ACAGGCATGT GCTCGCGAGC
CGGCCGATGG TGTGGATCGG GCTCATCAGC TATCCGCTCT ACCTGTGGCA CTGGCCCTTG
CTGGTGTATG CGCGCATCGT GGAAGAGGGC GAGCCGGCGG CGTGGATCCG CGCATGCCTG
GTGCTGGCGA GCGTGGCGCT GGCCTGGTTC ACCTATCGCT TCGTCGAGCG CTTCACCCGG
GCCCGAACCC AGGTCGGCAT GCTGCGTTCG CTGGTGGCCG GCAGCATGGC GATCGCGGTG
GCCGGCCTGC TGGCGCTGGG CGGCATGGCG CCGCGCAACG GCAGCGACCT GCTGCGCAAG
GTGACCGACG CCACCGTGGA CGACAACTAC TACGCCGGCT TCGAGCAGCA GAAGATCGGT
GCCTATCCGG TCAAGCGCGT GGGCAGCGGG CCGCGCACGG TCCTGCTGAT CGGCGACAGC
CACATCCTGC AGTACGCACC CCGCGCCCTG GCGCTCGCGG GCAGCGCGCC CGCGCGCATG
GCGACCACCT ACTTCTCGAC CTATGGCGCC TGCCCGCCGG TGCCCGGCAT GGTCGCCGAA
GGCAACCCGG GCTGCGAAAA GGCGCGCGGC GAGATGCTGG CGCTGGCGCT CGATCCGCGG
ATCGACACGG TGGTGGTGGG CGGCTGCTGG AACTGCTATT TCACGGGCAA TTTCCCGCTG
CCCTTCTACT TTCGCGAAGG CGATGCGGCG TACCTCGTGA ACAACGGCGG CGAAGGCCTC
GGCCGCTCGC TGGCTTCGCT CGAGAAACTG CTGGCCGAAC TGGTGCGGCA AAAGAAGAAG
GTCTACCTGC TGCTGGACAA CGCCAGCGGC CCCGAGTTCG AGCCGAGGCG CCTCATCGAA
GGCAGCCGCA TGGGCCGGAT GGTGGCGCTG CACAGCACGC CCACGGCGCC CCTGCCGCCG
GACCAGGCGC AGCTCAACGA GCAGCTGAAG GCGCTGGCGC GGGCGAGTGG CGCGGAGCCC
ATCGATGTGA TGGCCCGGCT TTGCACCGGC GGGCAGTGCC TGCGCGCAAC GCCCGACGAC
GCACCGGTCT ACAAGGACCG GGAGCATCTG CGCCCGGCCT ATGTGCGCGG CCATGCGGAC
TATCTGGACC GCATCCTGCT CGCGCCGCAG CCGTAG
 
Protein sequence
MMHPKYRPDI DGLRAVAVAS VLAFHAFPDA LPGGFIGVDI FFVISGFLIT TIIMQSHAAG 
DFSYRDFYAR RIRRIFPALT LVLLATLAFG WYALLPREFT ELGKQAAGGA AFIANFVFWG
EAGYFDTAAE TKPLLHLWSL GIEEQFYIFW PMLLALAWRR RWPILRLLWV LAAVSFLVNV
LTIHPYRTAA FYSPASRFWE LMVGGILACM RLKAAGKAPA PAWRSHLQSC LGVGLIVLGL
VMTRSDKAFP GWWALLPTLG AASCIAAGPA GLLNRHVLAS RPMVWIGLIS YPLYLWHWPL
LVYARIVEEG EPAAWIRACL VLASVALAWF TYRFVERFTR ARTQVGMLRS LVAGSMAIAV
AGLLALGGMA PRNGSDLLRK VTDATVDDNY YAGFEQQKIG AYPVKRVGSG PRTVLLIGDS
HILQYAPRAL ALAGSAPARM ATTYFSTYGA CPPVPGMVAE GNPGCEKARG EMLALALDPR
IDTVVVGGCW NCYFTGNFPL PFYFREGDAA YLVNNGGEGL GRSLASLEKL LAELVRQKKK
VYLLLDNASG PEFEPRRLIE GSRMGRMVAL HSTPTAPLPP DQAQLNEQLK ALARASGAEP
IDVMARLCTG GQCLRATPDD APVYKDREHL RPAYVRGHAD YLDRILLAPQ P