Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4228 |
Symbol | |
ID | 7971312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4468215 |
End bp | 4470170 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644794815 |
Product | acyltransferase 3 |
Protein accession | YP_002946107 |
Protein GI | 239817197 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1835] Predicted acyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0660245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGCACC CCAAGTACCG CCCCGACATC GACGGCCTGC GCGCCGTGGC GGTGGCCTCG GTGCTGGCCT TCCATGCGTT TCCCGATGCA TTGCCGGGGG GCTTCATCGG GGTCGACATC TTCTTCGTGA TCTCGGGCTT CCTGATCACG ACCATCATCA TGCAGAGCCA CGCGGCCGGC GACTTCAGCT ACCGCGACTT CTACGCGCGG CGCATCCGGC GGATCTTTCC GGCGCTCACG CTGGTGCTGC TGGCCACGCT CGCCTTCGGC TGGTATGCGC TGCTGCCCAG GGAGTTCACC GAACTCGGCA AGCAGGCAGC GGGCGGCGCG GCCTTCATCG CCAATTTCGT CTTCTGGGGC GAGGCCGGGT ACTTCGACAC GGCCGCCGAG ACCAAGCCGC TGCTGCACCT GTGGTCGCTG GGCATCGAGG AGCAGTTCTA CATCTTCTGG CCCATGCTGC TCGCGCTGGC CTGGCGCCGG CGCTGGCCCA TTCTTCGGCT GCTGTGGGTG CTCGCGGCGG TGTCGTTCCT GGTCAACGTG CTGACCATCC ACCCTTACCG CACGGCGGCC TTCTACTCGC CCGCTTCGCG CTTCTGGGAG CTGATGGTGG GCGGCATCCT GGCCTGCATG CGCCTCAAGG CCGCGGGCAA GGCGCCGGCG CCGGCCTGGC GCAGCCACCT GCAGTCCTGC CTGGGCGTGG GGCTGATCGT GCTCGGGCTC GTGATGACCC GCAGCGACAA GGCCTTTCCA GGCTGGTGGG CGCTGCTGCC CACGCTGGGC GCGGCAAGCT GCATCGCGGC CGGGCCTGCG GGCCTGCTCA ACAGGCATGT GCTCGCGAGC CGGCCGATGG TGTGGATCGG GCTCATCAGC TATCCGCTCT ACCTGTGGCA CTGGCCCTTG CTGGTGTATG CGCGCATCGT GGAAGAGGGC GAGCCGGCGG CGTGGATCCG CGCATGCCTG GTGCTGGCGA GCGTGGCGCT GGCCTGGTTC ACCTATCGCT TCGTCGAGCG CTTCACCCGG GCCCGAACCC AGGTCGGCAT GCTGCGTTCG CTGGTGGCCG GCAGCATGGC GATCGCGGTG GCCGGCCTGC TGGCGCTGGG CGGCATGGCG CCGCGCAACG GCAGCGACCT GCTGCGCAAG GTGACCGACG CCACCGTGGA CGACAACTAC TACGCCGGCT TCGAGCAGCA GAAGATCGGT GCCTATCCGG TCAAGCGCGT GGGCAGCGGG CCGCGCACGG TCCTGCTGAT CGGCGACAGC CACATCCTGC AGTACGCACC CCGCGCCCTG GCGCTCGCGG GCAGCGCGCC CGCGCGCATG GCGACCACCT ACTTCTCGAC CTATGGCGCC TGCCCGCCGG TGCCCGGCAT GGTCGCCGAA GGCAACCCGG GCTGCGAAAA GGCGCGCGGC GAGATGCTGG CGCTGGCGCT CGATCCGCGG ATCGACACGG TGGTGGTGGG CGGCTGCTGG AACTGCTATT TCACGGGCAA TTTCCCGCTG CCCTTCTACT TTCGCGAAGG CGATGCGGCG TACCTCGTGA ACAACGGCGG CGAAGGCCTC GGCCGCTCGC TGGCTTCGCT CGAGAAACTG CTGGCCGAAC TGGTGCGGCA AAAGAAGAAG GTCTACCTGC TGCTGGACAA CGCCAGCGGC CCCGAGTTCG AGCCGAGGCG CCTCATCGAA GGCAGCCGCA TGGGCCGGAT GGTGGCGCTG CACAGCACGC CCACGGCGCC CCTGCCGCCG GACCAGGCGC AGCTCAACGA GCAGCTGAAG GCGCTGGCGC GGGCGAGTGG CGCGGAGCCC ATCGATGTGA TGGCCCGGCT TTGCACCGGC GGGCAGTGCC TGCGCGCAAC GCCCGACGAC GCACCGGTCT ACAAGGACCG GGAGCATCTG CGCCCGGCCT ATGTGCGCGG CCATGCGGAC TATCTGGACC GCATCCTGCT CGCGCCGCAG CCGTAG
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Protein sequence | MMHPKYRPDI DGLRAVAVAS VLAFHAFPDA LPGGFIGVDI FFVISGFLIT TIIMQSHAAG DFSYRDFYAR RIRRIFPALT LVLLATLAFG WYALLPREFT ELGKQAAGGA AFIANFVFWG EAGYFDTAAE TKPLLHLWSL GIEEQFYIFW PMLLALAWRR RWPILRLLWV LAAVSFLVNV LTIHPYRTAA FYSPASRFWE LMVGGILACM RLKAAGKAPA PAWRSHLQSC LGVGLIVLGL VMTRSDKAFP GWWALLPTLG AASCIAAGPA GLLNRHVLAS RPMVWIGLIS YPLYLWHWPL LVYARIVEEG EPAAWIRACL VLASVALAWF TYRFVERFTR ARTQVGMLRS LVAGSMAIAV AGLLALGGMA PRNGSDLLRK VTDATVDDNY YAGFEQQKIG AYPVKRVGSG PRTVLLIGDS HILQYAPRAL ALAGSAPARM ATTYFSTYGA CPPVPGMVAE GNPGCEKARG EMLALALDPR IDTVVVGGCW NCYFTGNFPL PFYFREGDAA YLVNNGGEGL GRSLASLEKL LAELVRQKKK VYLLLDNASG PEFEPRRLIE GSRMGRMVAL HSTPTAPLPP DQAQLNEQLK ALARASGAEP IDVMARLCTG GQCLRATPDD APVYKDREHL RPAYVRGHAD YLDRILLAPQ P
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