| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4226 |
|---|
| Symbol | |
|---|
| ID | 7971310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4467180 |
|---|
| End bp | 4467935 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644794813 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946105 |
|---|
| Protein GI | 239817195 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4582] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0235204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCTCT ACGAGTACCC CTTCAACGAG CGCATCCGCA CCTATCTGCG GCTGGAGCAC
CTGTTCCGCC GTCTCGGGGA GCTGGTGCCC TCGGAGTCCG CGCTCTCGCA CCACTACGCG
CTGGTAACGA TCTTCGAGAT CATGGATGTC GCCGCACGCG CCGACCTCAA GGCCGATGTG
ATGCGCGACC TCGACAAGCA CAAGAACGTC TTCAACAGCT ACCGCGGCAA TCCCGCCATT
GCCGAGGCCG TGCTCGACCA GGTGGTCGGC CAGCTCGAAC GCAATTTCGC CACGCTCAAT
GCCGTTGCCG GCAAGGCCGG CCAGTCGCTG ACCGAAAACG AATGGCTCAT GAGCATTCGC
AGCCGCGCGG GCATTCCGGG CGGCACCTGC GAATTCGACC TGCCCGCCTA CTACGCGTGG
CAGCACCGCA GCGCGGCCAG CCGCCGCGCC GACCTCGAAC GCTGGTCGGC CACGCTCTCG
CCGCTGGCCG AATCCATCTA CCTGCTGCTC AAGCTGCTGC GCGATGCCGA CGTGCCCTAC
AAGGTCATCG CCACCAGCGG ACAATTCCAG CAGAACCTGC CGCAGGGGCG CAGCTTCCAG
CTGCTGCGCC TGCGCATCGA TCCGCAGCTG GGGCTGATTC CCGAAATCAG CGGCAACCGG
CTCATGGTGT CGGTGCGGAT GATGCGGCAT GAAGCCGACG ACCGCCTGCA CCCGAGCAGC
GACGACGTCG CATTCGAACT CACGCTCTGC GCCTGA
|
|---|
| Protein sequence | MILYEYPFNE RIRTYLRLEH LFRRLGELVP SESALSHHYA LVTIFEIMDV AARADLKADV
MRDLDKHKNV FNSYRGNPAI AEAVLDQVVG QLERNFATLN AVAGKAGQSL TENEWLMSIR
SRAGIPGGTC EFDLPAYYAW QHRSAASRRA DLERWSATLS PLAESIYLLL KLLRDADVPY
KVIATSGQFQ QNLPQGRSFQ LLRLRIDPQL GLIPEISGNR LMVSVRMMRH EADDRLHPSS
DDVAFELTLC A
|
|---|
| |