| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4224 |
|---|
| Symbol | |
|---|
| ID | 7971308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4464624 |
|---|
| End bp | 4466117 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644794811 |
|---|
| Product | membrane bound O-acyl transferase MBOAT family protein |
|---|
| Protein accession | YP_002946103 |
|---|
| Protein GI | 239817193 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1696] Predicted membrane protein involved in D-alanine export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.187339 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTCA ATTCGTATCC CTTCATTTTT GTCTTCTTCC CGCTGGTACT GATCGGGTTC
TTCCTGATCG GCAAGCGCAA CGCCCGGTCC GCCGCGGGCT TTCTCGCCCT GGCCTCGCTG
TTCTTCTACG GCTGGTGGAG CGTCAAGGCG CTGCCGCTGC TGGTGGCGTC GATCTGCATC
AACTACTGGT TCGGGCTGCG CCTGTCGCCC GCGCCGGAGC GGGACGACCG CAAGCGCAAG
TCGCTGCTGG TGCTGGCGCT GGTGGTCAAC CTGGGCGTGC TCGCGGTCTT CAAGTACGCC
AACTTCTTCG TCTCGAACGT GAACGACGGG CTGGCCGCGG CGGGCCTGTC GCAGATCCCG
CTGCTGCACA TCGTGCTGCC GATCGGCATC TCGTTCTACA CCTTCACGCA GATCGCCTTC
CTGGTCGACT GCTGGCAAGG CAAGGTGCAT GAGCGCAGCT TCATCCACTA CGTGCTGTTC
GTCACCTACT TTCCGCACCT GATCGCGGGC CCGGTGCTGC ACCACGCGCA GATGATGCCG
CAGTTCGCCA ATGCGGCCAC CTACCGGTTC GACCCCAACA AGGTGGCGCT CGGCATTGCG
ATCTTCACCT TCGGCCTCGC CAAGAAGCTG CTGATCGCCG ACCCGGTGGG CCAGTACGCC
GACATGATGT TCAACGGCGT GCACAAGGGC ATCGAGCCCA CGCTCTACAC CGCATGGTTC
GGCGCGCTCG CCTACACGCT GCAGATCTAT TTCGACTTCT CGGGCTATTC GGACATGGCG
GTCGGCCTGT CGCTGTGCCT GGGCGTGCAG CTTCCGCTGA ATTTCCGCTC GCCCTACAAG
TCGACCAACA TCATCGAATT CTGGCGGCGC TGGCACATCT CGCTGTCGAA CTTCCTGCGC
GACTATCTCT ACGTGCCGCT GGGCGGCAAC CGCAAGGGGC CGGCCCGGCG CTACCTGAAC
CTGTTCCTCA CGATGCTGCT GGGCGGCCTC TGGCACGGCG CCGCCTGGAC CTTCGTGATC
TGGGGCGCGC TGCACGGCGT GTTCCTGATG ATCAACCACC TCTGGAACGC CAAGGTGCGG
CGCAACACTC CGGCGGGGCC GGTCGCGCAC GTGCTGGGCT GGTTCGTGAC CTTCCTGTGC
GTGGTGCTGG CCTGGATCGT GTTCCGCGCC GACGGCCTGC ACACGGCCAT GGCCATCTAC
AAGGGCATGC TCGGCCTGCA TGGCGCACCG CCTTCCGCGT TCAGCGAGCT GGGGCCGGTT
CCGTTCCGCA AGCCCGAGTT CTTCCAGACC ATGCTCGTGG GCATCGTCAT CTGCCTCGCA
TTGCCGCCGA CGATCACGCT CGAGCGCTGG ATTCCCCACC CGAAGGCGGT GGCGGGGCAG
CGCGTCATGG CCTGGTGCTC CTCGGCCGTG CTGGCCATCG GTACCTTCGC GCTCTTCGCC
TGGTGCGTCT CGAAGCTGGG CAACTACAGC CCGTTCCTCT ACTTCCAATT CTGA
|
|---|
| Protein sequence | MLFNSYPFIF VFFPLVLIGF FLIGKRNARS AAGFLALASL FFYGWWSVKA LPLLVASICI
NYWFGLRLSP APERDDRKRK SLLVLALVVN LGVLAVFKYA NFFVSNVNDG LAAAGLSQIP
LLHIVLPIGI SFYTFTQIAF LVDCWQGKVH ERSFIHYVLF VTYFPHLIAG PVLHHAQMMP
QFANAATYRF DPNKVALGIA IFTFGLAKKL LIADPVGQYA DMMFNGVHKG IEPTLYTAWF
GALAYTLQIY FDFSGYSDMA VGLSLCLGVQ LPLNFRSPYK STNIIEFWRR WHISLSNFLR
DYLYVPLGGN RKGPARRYLN LFLTMLLGGL WHGAAWTFVI WGALHGVFLM INHLWNAKVR
RNTPAGPVAH VLGWFVTFLC VVLAWIVFRA DGLHTAMAIY KGMLGLHGAP PSAFSELGPV
PFRKPEFFQT MLVGIVICLA LPPTITLERW IPHPKAVAGQ RVMAWCSSAV LAIGTFALFA
WCVSKLGNYS PFLYFQF
|
|---|
| |