| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4222 |
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| Symbol | |
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| ID | 7971306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4462964 |
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| End bp | 4463929 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794809 |
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| Product | Prepilin peptidase |
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| Protein accession | YP_002946101 |
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| Protein GI | 239817191 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.32554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGTGT CGCAGGAGTT CGACGCCGCT TTCGCCGGCG TCCTCGGGTT GCTGGTCGGC
AGTTTTCTCA ACGTGGTGAT CTACCGCACC CCGGTCATGA TGTACCGGGG CTGGCTGGCC
GATGCCGTGG CCAACCTGAT GTCGTCCAAG GACGTCCCGT CGCTCTGGAC GCTGGTGTTC
GGGCCCAAGG CGCAGCCGCC GGCCGGGCTC GAAGCCGCGG CGGACAAGGC GGCCGTGGCC
CTCGAGGCGC TGCCGCCCTT CGACCTCGCC CGGCCGGCCT CGCGCTGCGG CGCCTGCGGC
CACAGGATCC GCTGGTACCA GAACATCCCG GTGCTGAGCT ACCTGGTGCT GCGGGGCCGC
TGCGCCGCCT GCGGCACGTC CATCAGCCCG CGCTATCCGC TGGTGGAGCT GGTGACGGGC
GCGCTGTTCG CCCTGTGCGC CTACCGCTTC GGCCTCACGC CCACCGGCGC GCTCTGGGCG
GCGTTCGCGG CCTTCCTGAT CTGCCAGTTC CTGATCGACT TCGACACCCA GTTCCTGCCC
GACGCGCTCA ACTATCCGCT GCTGTGGCTC GGGCTCGTCG GCGCGGCCAT GGGCTGGACC
GGCACCGCGC TGAGCTCGGC GGTCTGGGGC GCCGTCTTCG GCTACCTGAG CCTGTGGCTT
GTGTACCATG GCTATCGCCT GGCCACGGGC AAGGAAGGCA TGGGATATGG CGACTTCAAA
CTGCTGGCGG CGCTCGGCGC CTGGCTCGGG GCCGACTACC TCATTGCCAT CATCCTGGTC
TCATCGCTGG TGGGCGCCGT GATCGGCCTG ACGCTGCGCC TTGTCGGGAA GCTGGCGCAC
AAGGACATTC CGATGGCCTT CGGTCCCTTT CTTGCCGGTG CCGGCCTGGT CTGCCTGGTG
GCAGGCCCGG AGCTCGTGAG GCAATGGATT CCCTTCGCCT TCCCGCTCGG CGCATTCGCC
CGCTGA
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| Protein sequence | MLVSQEFDAA FAGVLGLLVG SFLNVVIYRT PVMMYRGWLA DAVANLMSSK DVPSLWTLVF
GPKAQPPAGL EAAADKAAVA LEALPPFDLA RPASRCGACG HRIRWYQNIP VLSYLVLRGR
CAACGTSISP RYPLVELVTG ALFALCAYRF GLTPTGALWA AFAAFLICQF LIDFDTQFLP
DALNYPLLWL GLVGAAMGWT GTALSSAVWG AVFGYLSLWL VYHGYRLATG KEGMGYGDFK
LLAALGAWLG ADYLIAIILV SSLVGAVIGL TLRLVGKLAH KDIPMAFGPF LAGAGLVCLV
AGPELVRQWI PFAFPLGAFA R
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